SMTL ID : 2anz.1

cytochrome c peroxidase in complex with 2,6-diaminopyridine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 23 residues within 4Å: Chain A: P.44, V.45, R.48, W.51, P.145, D.146, A.147, F.158, L.171, M.172, A.174, H.175, L.177, G.178, K.179, T.180, H.181, N.184, S.185, L.232, T.234, F.262 Ligands: 26D.2 30 PLIP interactions: 29 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:R.48, A:W.51, A:W.51, A:W.51, A:P.145, A:A.147, A:F.158, A:L.171, A:L.171, A:A.174, A:L.177, A:T.180, A:L.232, A:F.262 Hydrogen bonds: A:K.179, A:H.181, A:N.184, A:S.185 Water bridges: A:D.37, A:D.37, A:D.37, A:H.181 Salt bridges: A:R.48, A:H.181, A:H.181 pi-Stacking: A:W.51 pi-Cation interactions: A:R.48, A:H.175 Metal complexes: A:H.175, H2O.13

1 x 26D: PYRIDINE-2,6-DIAMINE(Non-covalent)

26D.2: 11 residues within 4Å: Chain A: H.175, L.177, G.178, K.179, T.180, G.191, M.230, M.231, L.232, D.235 Ligands: HEM.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:H.175, A:T.180, A:L.232 Hydrogen bonds: A:L.177, A:G.191, A:L.232, A:D.235 pi-Stacking: A:H.175

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brenk, R. et al., Probing molecular docking in a charged model binding site. J.Mol.Biol. (2006)

Release Date

2006-04-11

Peptides

Cytochrome c peroxidase, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome c peroxidase, mitochondrial

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