SMTL ID : 2aoa.2 (2 other biounits)

Crystal structures of a high-affinity macrocyclic peptide mimetic in complex with the Grb2 SH2 domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

monomer

Ligands

1 x S1S: 2-(4-((9S,10S,14S,Z)-18-(2-AMINO-2-OXOETHYL)-9-(CARBOXYMETHYL)-14-(NAPHTHALEN-1-YLMETHYL)-8,17,20-TRIOXO-7,16,19-TRIAZASPIRO[5.14]ICOS-11-EN-10-YL)PHENYL)MALONIC ACID(Non-covalent)

S1S.1: 10 residues within 4Å: Chain A: R.32, S.42, Q.52, H.53, F.54, K.55, L.57, L.66, W.67 Ligands: P33.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Q.52, A:Q.52, A:F.54, A:F.54, A:L.57, A:W.67 Hydrogen bonds: A:S.42, A:H.53, A:H.53, A:K.55, A:L.66 Salt bridges: A:R.32, A:K.55

1 x P33: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL(Non-covalent)

P33.2: 4 residues within 4Å: Chain A: R.58, D.59, F.65 Ligands: S1S.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Phan, J. et al., Crystal Structures of a High-affinity Macrocyclic Peptide Mimetic in Complex with the Grb2 SH2 Domain. J.Mol.Biol. (2005)

Release Date

2005-10-04

Peptides

Growth factor receptor-bound protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Growth factor receptor-bound protein 2

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