SMTL ID : 2aqw.2 (1 other biounit)

Structure of putative orotidine-monophosphate-decarboxylase from Plasmodium yoelii (PY01515)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

12 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 1 residues within 4Å: Chain A: T.197 Ligand excluded by PLIP IOD.2: 2 residues within 4Å: Chain A: K.45, G.70 Ligand excluded by PLIP IOD.3: 1 residues within 4Å: Chain A: F.82 Ligand excluded by PLIP IOD.4: 2 residues within 4Å: Chain A: A.271, A.298 Ligand excluded by PLIP IOD.5: 2 residues within 4Å: Chain A: D.201 Chain B: N.174 Ligand excluded by PLIP IOD.6: 2 residues within 4Å: Chain A: R.10, K.98 Ligand excluded by PLIP IOD.10: 1 residues within 4Å: Chain B: T.197 Ligand excluded by PLIP IOD.11: 2 residues within 4Å: Chain B: K.45, G.70 Ligand excluded by PLIP IOD.12: 1 residues within 4Å: Chain B: F.82 Ligand excluded by PLIP IOD.13: 2 residues within 4Å: Chain B: A.271, A.298 Ligand excluded by PLIP IOD.14: 2 residues within 4Å: Chain A: N.174 Chain B: D.201 Ligand excluded by PLIP IOD.15: 2 residues within 4Å: Chain B: R.10, K.98 Ligand excluded by PLIP

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 4 residues within 4Å: Chain A: N.35, N.39, K.42, N.43 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.35, A:N.35, A:N.39, A:N.43 Salt bridges: A:K.42 SO4.8: 5 residues within 4Å: Chain A: I.269, A.271, Q.272, G.296, R.297 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:I.269, A:Q.272, A:G.296, A:R.297 Water bridges: A:D.23, A:D.23, A:K.105, A:K.105, A:I.269, A:A.271, A:Q.272, A:A.298 Salt bridges: A:R.297 SO4.9: 6 residues within 4Å: Chain A: K.150, R.153, F.181, D.182, Y.183, E.184 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Y.183, A:E.184 Water bridges: A:R.153, A:R.153, A:R.153, A:D.182 Salt bridges: A:K.150, A:R.153 SO4.16: 4 residues within 4Å: Chain B: N.35, N.39, K.42, N.43 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:N.35, B:N.35, B:N.39, B:N.43 Water bridges: B:Y.92 Salt bridges: B:K.42 SO4.17: 5 residues within 4Å: Chain B: I.269, A.271, Q.272, G.296, R.297 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:I.269, B:Q.272, B:G.296, B:R.297 Water bridges: B:D.23, B:K.105, B:K.105, B:I.269, B:A.271, B:Q.272, B:R.297, B:A.298 Salt bridges: B:R.297 SO4.18: 6 residues within 4Å: Chain B: K.150, R.153, F.181, D.182, Y.183, E.184 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:Y.183, B:E.184 Water bridges: B:R.153, B:D.178, B:D.178, B:D.182 Salt bridges: B:K.150, B:R.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vedadi, M. et al., Genome-scale protein expression and structural biology of Plasmodium falciparum and related Apicomplexan organisms. Mol.Biochem.Parasitol. (2007)

Release Date

2005-08-30

Peptides

putative orotidine-monophosphate-decarboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

putative orotidine-monophosphate-decarboxylase

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