SMTL ID : 2asd.1 (1 other biounit)

oxoG-modified Insertion Ternary Complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

4 x CA: CALCIUM ION(Non-functional Binders)(Non-covalent)

CA.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.2: 6 residues within 4Å: Chain A: G.13 Chain C: D.15, E.114, K.160, K.167 Ligands: DCP.5 5 PLIP interactions: 2 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:D.15, C:E.114, H2O.4, H2O.4, H2O.4 CA.3: 4 residues within 4Å: Chain C: D.15, F.16, D.113 Ligands: DCP.5 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.15, C:F.16, C:D.113 CA.4: 2 residues within 4Å: Chain C: A.189, I.194 5 PLIP interactions: 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: C:A.189, H2O.1, H2O.9, H2O.9, H2O.9

1 x DCP: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE(Non-covalent)

DCP.5: 17 residues within 4Å: Chain A: G.13 Chain B: G.6 Chain C: D.15, F.16, D.17, Y.18, F.19, Y.20, A.52, T.53, Y.56, R.59, A.65, D.113, K.167 Ligands: CA.2, CA.3 18 PLIP interactions: 18 interactions with chain C Hydrophobic interactions: C:Y.20, C:A.65 Hydrogen bonds: C:Y.18, C:F.19, C:Y.20, C:T.53, C:T.53, C:Y.56, C:D.113 Water bridges: C:Y.20, C:R.59, C:A.65, C:K.167, C:K.167 Salt bridges: C:R.59, C:R.59, C:K.167, C:K.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rechkoblit, O. et al., Stepwise Translocation of Dpo4 Polymerase during Error-Free Bypass of an oxoG Lesion. Plos Biol. (2006)

Release Date

2006-01-10

Peptides

DNA polymerase IV: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

DNA polymerase IV

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