SMTL ID : 2ask.2 (2 other biounits)

Structure of human Artemin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-tetramer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain B: G.15, S.46, C.47, R.48, R.49 Chain C: R.99 5 PLIP interactions: 1 interactions with chain C, 4 interactions with chain B Salt bridges: C:R.99, B:R.48, B:R.49 Hydrogen bonds: B:R.48, B:R.49 SO4.2: 5 residues within 4Å: Chain A: G.15, S.46, C.47, R.48, R.49 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.48, A:R.49 Water bridges: A:S.46, A:S.46 Salt bridges: A:R.49 SO4.3: 5 residues within 4Å: Chain A: R.14, S.46, R.48 Chain B: G.72, S.73 7 PLIP interactions: 2 interactions with chain B, 5 interactions with chain A Water bridges: B:S.73, B:S.73, A:S.46, A:S.46, A:S.46 Salt bridges: A:R.14, A:R.48 SO4.4: 5 residues within 4Å: Chain A: H.32, R.33, S.34, D.93, V.94 8 PLIP interactions: 3 interactions with chain D, 5 interactions with chain A Water bridges: D:R.49, D:R.49, D:R.49, A:R.33 Hydrogen bonds: A:R.33, A:S.34, A:V.94 Salt bridges: A:H.32 SO4.5: 5 residues within 4Å: Chain A: S.20, Q.21, L.22, R.39 Chain B: R.68 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:L.22 Water bridges: A:Q.21, A:R.39, B:R.68 Salt bridges: A:R.39, B:R.68 SO4.6: 3 residues within 4Å: Chain A: R.48, R.51, A.59 4 PLIP interactions: 4 interactions with chain A Water bridges: A:S.77, A:Q.78 Salt bridges: A:R.48, A:R.51 SO4.7: 6 residues within 4Å: Chain A: R.99 Chain D: G.15, S.46, C.47, R.48, R.49 5 PLIP interactions: 4 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:R.48, D:R.49 Salt bridges: D:R.48, D:R.49, A:R.99 SO4.8: 5 residues within 4Å: Chain C: G.15, S.46, C.47, R.48, R.49 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:R.48, C:R.49 Water bridges: C:S.46, C:S.46 Salt bridges: C:R.49 SO4.9: 5 residues within 4Å: Chain C: R.14, S.46, R.48 Chain D: G.72, S.73 7 PLIP interactions: 2 interactions with chain D, 5 interactions with chain C Water bridges: D:S.73, D:S.73, C:S.46, C:S.46, C:S.46 Salt bridges: C:R.14, C:R.48 SO4.10: 5 residues within 4Å: Chain C: H.32, R.33, S.34, D.93, V.94 8 PLIP interactions: 5 interactions with chain C, 3 interactions with chain B Hydrogen bonds: C:R.33, C:S.34, C:V.94 Water bridges: C:R.33, B:R.49, B:R.49, B:R.49 Salt bridges: C:H.32 SO4.11: 5 residues within 4Å: Chain C: S.20, Q.21, L.22, R.39 Chain D: R.68 6 PLIP interactions: 2 interactions with chain D, 4 interactions with chain C Water bridges: D:R.68, C:Q.21, C:R.39 Salt bridges: D:R.68, C:R.39 Hydrogen bonds: C:L.22 SO4.12: 3 residues within 4Å: Chain C: R.48, R.51, A.59 4 PLIP interactions: 4 interactions with chain C Water bridges: C:S.77, C:Q.78 Salt bridges: C:R.48, C:R.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Silvian, L. et al., Artemin crystal structure reveals insights into heparan sulfate binding. Biochemistry (2006)

Release Date

2006-06-13

Peptides

artemin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

artemin

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