SMTL ID : 2ast.2 (2 other biounits)

Crystal structure of Skp1-Skp2-Cks1 in complex with a p27 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-2-2-2-2-mer

Ligands

4 x BEN: BENZAMIDINE(Non-functional Binders)

BEN.1: 5 residues within 4Å: Chain B: A.139, S.142, T.162, S.165, S.166 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:T.162 Hydrogen bonds: B:A.139, B:S.142 BEN.2: 5 residues within 4Å: Chain B: F.81, V.104 Chain C: Y.53, M.54, R.66 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:V.104 Water bridges: B:N.102, B:N.102, C:Y.53 pi-Stacking: C:Y.53 BEN.3: 5 residues within 4Å: Chain F: A.139, S.142, T.162, S.165, S.166 3 PLIP interactions: 3 interactions with chain F Hydrophobic interactions: F:T.162 Hydrogen bonds: F:A.139, F:S.142 BEN.4: 5 residues within 4Å: Chain F: F.81, V.104 Chain G: Y.53, M.54, R.66 5 PLIP interactions: 2 interactions with chain G, 3 interactions with chain F Water bridges: G:Y.53, F:N.102, F:N.102 pi-Stacking: G:Y.53 Hydrophobic interactions: F:V.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hao, B. et al., Structural Basis of the Cks1-Dependent Recognition of p27(Kip1) by the SCF(Skp2) Ubiquitin Ligase. Mol.Cell (2005)

Release Date

2005-10-18

Peptides

S-phase kinase-associated protein 1A: AE
S-phase kinase-associated protein 2: BF
Cyclin-dependent kinases regulatory subunit 1: CG
Cyclin-dependent kinase inhibitor 1B: DH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

B
B

F
B

C
C

G
C

D
D

H
D

S-phase kinase-associated protein 1A

S-phase kinase-associated protein 2

Cyclin-dependent kinases regulatory subunit 1

Cyclin-dependent kinase inhibitor 1B

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