SMTL ID : 2avn.2 (1 other biounit)

CRYSTAL STRUCTURE OF A UBIQUINONE/MENAQUINONE BIOSYNTHESIS METHYLTRANSFERASE-RELATED PROTEIN (TM1389) FROM THERMOTOGA MARITIMA MSB8 AT 2.35 A RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-tetramer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 9 residues within 4Å: Chain A: R.222, R.226 Chain B: A.167, W.168 Chain C: R.222, R.226 Chain D: A.167, W.168 Ligands: PO4.4 12 PLIP interactions: 2 interactions with chain D, 4 interactions with chain C, 2 interactions with chain B, 4 interactions with chain A Hydrogen bonds: D:W.168, B:W.168 Water bridges: D:D.169, C:R.222, C:R.222, B:D.169, A:R.222, A:R.222 Salt bridges: C:R.222, C:R.226, A:R.222, A:R.226 PO4.4: 9 residues within 4Å: Chain A: R.222, R.226 Chain B: A.167, W.168 Chain C: R.222, R.226 Chain D: A.167, W.168 Ligands: PO4.1 12 PLIP interactions: 2 interactions with chain D, 4 interactions with chain C, 2 interactions with chain B, 4 interactions with chain A Hydrogen bonds: D:W.168, B:W.168 Water bridges: D:D.169, C:R.222, C:R.222, B:D.169, A:R.222, A:R.222 Salt bridges: C:R.222, C:R.226, A:R.222, A:R.226

4 x SAI: S-ADENOSYL-L-HOMOSELENOCYSTEINE(Non-covalent)

SAI.2: 19 residues within 4Å: Chain A: S.17, Y.21, Y.28, G.62, G.63, G.64, W.68, D.83, P.84, S.85, M.88, K.104, A.105, E.106, L.121, G.122, V.124, Y.127, V.128 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.62, A:G.64, A:S.85, A:A.105, A:E.106 Water bridges: A:G.63, A:L.121, A:E.129 SAI.3: 20 residues within 4Å: Chain B: S.17, W.18, Y.21, Y.28, G.62, G.63, G.64, W.68, D.83, P.84, S.85, M.88, K.104, A.105, E.106, L.121, G.122, V.124, Y.127, V.128 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:S.17, B:Y.28, B:G.62, B:A.105, B:E.106 Water bridges: B:G.63, B:L.121, B:E.129 SAI.5: 19 residues within 4Å: Chain C: S.17, Y.21, Y.28, G.62, G.63, G.64, W.68, D.83, P.84, S.85, M.88, K.104, A.105, E.106, L.121, G.122, V.124, Y.127, V.128 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:G.62, C:G.64, C:S.85, C:A.105, C:E.106 Water bridges: C:G.63, C:L.121, C:E.129 SAI.6: 20 residues within 4Å: Chain D: S.17, W.18, Y.21, Y.28, G.62, G.63, G.64, W.68, D.83, P.84, S.85, M.88, K.104, A.105, E.106, L.121, G.122, V.124, Y.127, V.128 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:S.17, D:Y.28, D:G.62, D:A.105, D:E.106 Water bridges: D:G.63, D:L.121, D:E.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of Ubiquinone/menaquinone biosynthesis methyltransferase-related protein (tm1389) from THERMOTOGA MARITIMA at 2.35 A resolution. To be published

Release Date

2005-10-18

Peptides

ubiquinone/menaquinone biosynthesis methyltransferase-related protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

ubiquinone/menaquinone biosynthesis methyltransferase-related protein

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