SMTL ID : 2avo.1

Kinetics, stability, and structural changes in high resolution crystal structures of HIV-1 protease with drug resistant mutations L24I, I50V, AND G73S

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

homo-dimer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: P.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.1

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 1 residues within 4Å: Chain A: W.6 No protein-ligand interaction detected (PLIP)

1 x MK1: N-[2(R)-HYDROXY-1(S)-INDANYL]-5-[(2(S)-TERTIARY BUTYLAMINOCARBONYL)-4(3-PYRIDYLMETHYL)PIPERAZINO]-4(S)-HYDROXY-2(R)-PHENYLMETHYLPENTANAMIDE(Non-covalent)

MK1.3: 26 residues within 4Å: Chain A: R.8, L.23, D.25, G.27, D.30, I.47, G.48, G.49, I.50, P.81, V.82, I.84 Chain B: R.8, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, P.81, V.82, I.84 24 PLIP interactions: 13 interactions with chain B, 11 interactions with chain A Hydrophobic interactions: B:A.28, B:D.30, B:V.32, B:I.47, B:P.81, A:L.23, A:I.47, A:I.47, A:I.50, A:P.81, A:V.82 Hydrogen bonds: B:R.8, B:D.25, B:G.27, B:G.27, B:G.27, B:D.29, B:I.50 Salt bridges: B:D.25, A:D.25 Water bridges: A:G.27, A:D.29, A:G.48, A:I.50

2 x ACY: ACETIC ACID(Non-functional Binders)

ACY.4: 2 residues within 4Å: Chain B: M.36, S.37 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.37 ACY.5: 1 residues within 4Å: Chain B: G.17 2 PLIP interactions: 2 interactions with chain B Water bridges: B:G.17, B:G.17

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 5 residues within 4Å: Chain A: T.4, W.6 Chain B: T.91, G.94, T.96 1 PLIP interactions: 1 interactions with chain B Water bridges: B:G.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, F. et al., Kinetic, stability, and structural changes in high-resolution crystal structures of HIV-1 protease with drug-resistant mutations L24I, I50V, and G73S. J.Mol.Biol. (2005)

Release Date

2006-01-24

Peptides

Pol polyprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Pol polyprotein

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