SMTL ID : 2avv.2 (1 other biounit)

Kinetics, stability, and structural changes in high resolution crystal structures of HIV-1 protease with drug resistant mutations L24I, I50V, and G73S

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: K.20, E.21, N.83 Ligand excluded by PLIP

1 x MK1: N-[2(R)-HYDROXY-1(S)-INDANYL]-5-[(2(S)-TERTIARY BUTYLAMINOCARBONYL)-4(3-PYRIDYLMETHYL)PIPERAZINO]-4(S)-HYDROXY-2(R)-PHENYLMETHYLPENTANAMIDE(Non-covalent)

MK1.2: 25 residues within 4Å: Chain A: R.8, L.23, D.25, G.27, A.28, D.30, I.47, G.48, G.49, I.50, P.81, V.82, I.84 Chain B: D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, P.81, I.84 22 PLIP interactions: 11 interactions with chain A, 11 interactions with chain B Hydrophobic interactions: A:L.23, A:A.28, A:I.47, A:P.81, A:V.82, B:A.28, B:D.30, B:V.32, B:I.47, B:I.47, B:P.81 Water bridges: A:G.27, A:D.29, A:G.48, A:I.50, A:I.50, B:R.8 Salt bridges: A:D.25, B:D.25 Hydrogen bonds: B:D.25, B:G.27, B:D.29

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.3: 2 residues within 4Å: Chain B: M.36, S.37 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, F. et al., Kinetic, stability, and structural changes in high-resolution crystal structures of HIV-1 protease with drug-resistant mutations L24I, I50V, and G73S. J.Mol.Biol. (2005)

Release Date

2006-01-24

Peptides

Pol polyprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

Pol polyprotein

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