SMTL ID : 2awh.1

Human Nuclear Receptor-Ligand Complex 1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x B7G: heptyl beta-D-glucopyranoside(Non-covalent)

B7G.1: 13 residues within 4Å: Chain A: F.101, L.102, N.103, V.106, T.107 Chain B: T.88, V.106, K.110, L.259, E.262, I.263, K.265 Ligands: B7G.3 13 PLIP interactions: 7 interactions with chain B, 6 interactions with chain A Hydrophobic interactions: B:L.259, B:E.262, B:I.263, A:F.101 Hydrogen bonds: B:K.110, B:E.262, B:K.265, A:N.103, A:T.107, A:T.107 Salt bridges: B:K.110 Water bridges: A:N.103, A:N.103 B7G.3: 13 residues within 4Å: Chain A: T.88, V.106, L.109, K.110, L.259, E.262, I.263, K.265 Chain B: L.102, N.103, V.106, T.107 Ligands: B7G.1 12 PLIP interactions: 7 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:L.109, A:K.110, A:L.259, A:I.263, B:L.102 Hydrogen bonds: A:K.110, A:E.262, B:N.103, B:T.107 Salt bridges: A:K.110 Water bridges: B:N.103, B:N.103

2 x VCA: VACCENIC ACID(Non-covalent)

VCA.2: 13 residues within 4Å: Chain A: V.72, R.75, Q.77, T.79, T.80, H.114, L.130, V.132, I.154, H.240, M.244, L.260, Y.264 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.72, A:R.75, A:Q.77, A:T.79, A:V.132, A:I.154, A:L.260 Hydrogen bonds: A:T.80, A:Y.264 Salt bridges: A:H.114, A:H.240 VCA.4: 15 residues within 4Å: Chain B: R.75, C.76, Q.77, T.79, T.80, H.114, F.118, L.130, V.132, I.154, K.158, H.240, M.244, L.260, Y.264 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:R.75, B:Q.77, B:T.79, B:L.130, B:V.132, B:I.154, B:L.260 Hydrogen bonds: B:T.80, B:T.80 Salt bridges: B:H.114, B:H.240

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fyffe, S.A. et al., Recombinant Human PPAR-beta/delta Ligand-binding Domain is Locked in an Activated Conformation by Endogenous Fatty Acids. J.Mol.Biol. (2006)

Release Date

2006-02-14

Peptides

Peroxisome proliferator activated receptor delta: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator activated receptor delta