SMTL ID : 2axq.1

Apo histidine-tagged saccharopine dehydrogenase (L-Glu forming) from Saccharomyces cerevisiae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: G.176, G.177, T.265, R.267 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.177, A:G.177 Water bridges: A:Y.241 Salt bridges: A:R.267 SO4.2: 3 residues within 4Å: Chain A: P.97, Y.98, S.119 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.98 Water bridges: A:S.119 SO4.3: 3 residues within 4Å: Chain A: N.243, R.244, R.263 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.244 Water bridges: A:N.243, A:N.243, A:D.245 Salt bridges: A:R.244, A:R.263 SO4.4: 4 residues within 4Å: Chain A: G.404, K.405, V.406 Ligands: SO4.8 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.404, A:V.406 Water bridges: A:R.375 SO4.5: 4 residues within 4Å: Chain B: G.176, G.177, T.265, R.267 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.177, B:G.177 Water bridges: B:R.267 Salt bridges: B:R.267 SO4.6: 3 residues within 4Å: Chain B: P.97, Y.98, S.119 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.98 Water bridges: B:S.119 SO4.7: 3 residues within 4Å: Chain B: N.243, R.244, R.263 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:R.244 Water bridges: B:N.243, B:N.243, B:D.245 Salt bridges: B:R.244, B:R.263 SO4.8: 4 residues within 4Å: Chain B: G.404, K.405, V.406 Ligands: SO4.4 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.404, B:V.406 Water bridges: B:R.375

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Andi, B. et al., Crystal structure of the his-tagged saccharopine reductase from Saccharomyces cerevisiae at 1.7-A resolution. Cell Biochem.Biophys. (2006)

Release Date

2006-08-15

Peptides

Saccharopine dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Saccharopine dehydrogenase