SMTL ID : 2axr.1

Crystal structure of glucooligosaccharide oxidase from Acremonium strictum: a novel flavinylation of 6-S-cysteinyl, 8alpha-N1-histidyl FAD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.311 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.311 NAG.2: 2 residues within 4Å: Chain A: D.346, N.347 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.347

4 x ZN: ZINC ION(Non-covalent)

ZN.3: 3 residues within 4Å: Chain A: E.23, D.42, P.43 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.23, A:E.23, A:D.42 ZN.4: 4 residues within 4Å: Chain A: E.3, E.5, E.22, D.24 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.3, A:E.3, A:E.5, A:E.22, A:E.22 ZN.5: 1 residues within 4Å: Chain A: E.247 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.247, A:E.247, H2O.8 ZN.6: 1 residues within 4Å: Chain A: E.335 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.335, A:E.335, H2O.2

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)

FAD.7: 33 residues within 4Å: Chain A: F.35, A.71, K.72, G.73, G.74, G.75, H.76, S.77, Y.78, Y.81, G.82, L.94, G.112, G.134, T.135, C.136, V.139, G.140, G.142, G.143, H.144, L.146, G.149, Y.150, G.196, A.199, I.200, V.201, Y.432, N.434, Y.435, N.472 Ligands: ABL.8 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:F.35, A:H.76, A:Y.78, A:V.139 Hydrogen bonds: A:A.71, A:G.73, A:G.74, A:G.75, A:H.76, A:H.76, A:S.77, A:Y.81, A:G.82, A:T.135, A:G.140, A:G.143, A:H.144, A:Y.150, A:Y.150, A:V.201, A:V.201, A:N.434, A:N.434, A:N.472 Water bridges: A:G.197, A:G.197 pi-Stacking: A:H.144

1 x ABL: (2R,3R,4R,5R)-4,5-dihydroxy-2-(hydroxymethyl)-6-oxopiperidin-3-yl beta-D-glucopyranoside(Non-covalent)

ABL.8: 11 residues within 4Å: Chain A: Y.78, T.135, C.136, R.251, Y.306, W.357, Q.359, Q.390, Y.392, Y.435 Ligands: FAD.7 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:Y.78, A:T.135, A:R.251, A:R.251, A:Y.306, A:Y.306, A:Q.359, A:Q.390, A:Y.392, A:Y.392 Water bridges: A:E.253, A:Y.306, A:E.320, A:Y.435

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, C.-H. et al., Crystal Structure of Glucooligosaccharide Oxidase from Acremonium strictum: A NOVEL FLAVINYLATION OF 6-S-CYSTEINYL, 8{alpha}-N1-HISTIDYL FAD. J.Biol.Chem. (2005)

Release Date

2005-09-13

Peptides

glucooligosaccharide oxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

glucooligosaccharide oxidase

Related Entries With Identical Sequence