SMTL ID : 2ayt.3 (3 other biounits)

The crystal structure of a protein disulfide oxidoreductase from aquifex aeolicus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-12-mer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: M.157, P.207, E.208 Chain B: R.224 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:E.208 Water bridges: A:E.208 Salt bridges: B:R.224 SO4.2: 4 residues within 4Å: Chain A: R.224 Chain B: M.157, P.207, E.208 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Salt bridges: A:R.224 Hydrogen bonds: B:E.208 SO4.7: 4 residues within 4Å: Chain C: M.157, P.207, E.208 Chain D: R.224 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain C Salt bridges: D:R.224 Hydrogen bonds: C:E.208 Water bridges: C:E.208 SO4.8: 4 residues within 4Å: Chain C: R.224 Chain D: M.157, P.207, E.208 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain D Salt bridges: C:R.224 Hydrogen bonds: D:E.208 SO4.13: 4 residues within 4Å: Chain E: M.157, P.207, E.208 Chain F: R.224 3 PLIP interactions: 2 interactions with chain E, 1 interactions with chain F Hydrogen bonds: E:E.208 Water bridges: E:E.208 Salt bridges: F:R.224 SO4.14: 4 residues within 4Å: Chain E: R.224 Chain F: M.157, P.207, E.208 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:E.208 Salt bridges: E:R.224 SO4.19: 4 residues within 4Å: Chain G: M.157, P.207, E.208 Chain H: R.224 2 PLIP interactions: 1 interactions with chain H, 1 interactions with chain G Salt bridges: H:R.224 Hydrogen bonds: G:E.208 SO4.20: 4 residues within 4Å: Chain G: R.224 Chain H: M.157, P.207, E.208 2 PLIP interactions: 1 interactions with chain G, 1 interactions with chain H Salt bridges: G:R.224 Hydrogen bonds: H:E.208 SO4.25: 4 residues within 4Å: Chain I: M.157, P.207, E.208 Chain J: R.224 2 PLIP interactions: 1 interactions with chain J, 1 interactions with chain I Salt bridges: J:R.224 Hydrogen bonds: I:E.208 SO4.26: 4 residues within 4Å: Chain I: R.224 Chain J: M.157, P.207, E.208 2 PLIP interactions: 1 interactions with chain J, 1 interactions with chain I Hydrogen bonds: J:E.208 Salt bridges: I:R.224 SO4.31: 4 residues within 4Å: Chain K: M.157, P.207, E.208 Chain L: R.224 2 PLIP interactions: 1 interactions with chain L, 1 interactions with chain K Salt bridges: L:R.224 Hydrogen bonds: K:E.208 SO4.32: 4 residues within 4Å: Chain K: R.224 Chain L: M.157, P.207, E.208 2 PLIP interactions: 1 interactions with chain K, 1 interactions with chain L Salt bridges: K:R.224 Hydrogen bonds: L:E.208

24 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: D.80, R.81, I.98, E.139, W.141, K.171, I.173, L.181 Ligand excluded by PLIP GOL.4: 9 residues within 4Å: Chain A: Q.30, A.31, I.32 Chain H: L.3, V.7, L.43, A.102, G.103, F.106 Ligand excluded by PLIP GOL.5: 6 residues within 4Å: Chain A: T.145, S.147, C.148, V.190 Chain I: C.148 Ligands: GOL.29 Ligand excluded by PLIP GOL.6: 6 residues within 4Å: Chain B: D.80, R.81, I.98, W.141, K.171, L.181 Ligand excluded by PLIP GOL.9: 8 residues within 4Å: Chain C: D.80, R.81, I.98, E.139, W.141, K.171, I.173, L.181 Ligand excluded by PLIP GOL.10: 9 residues within 4Å: Chain C: Q.30, A.31, I.32 Chain L: L.3, V.7, L.43, A.102, G.103, F.106 Ligand excluded by PLIP GOL.11: 6 residues within 4Å: Chain C: T.145, S.147, C.148, V.190 Chain G: C.148 Ligands: GOL.23 Ligand excluded by PLIP GOL.12: 6 residues within 4Å: Chain D: D.80, R.81, I.98, W.141, K.171, L.181 Ligand excluded by PLIP GOL.15: 8 residues within 4Å: Chain E: D.80, R.81, I.98, E.139, W.141, K.171, I.173, L.181 Ligand excluded by PLIP GOL.16: 9 residues within 4Å: Chain E: Q.30, A.31, I.32 Chain J: L.3, V.7, L.43, A.102, G.103, F.106 Ligand excluded by PLIP GOL.17: 6 residues within 4Å: Chain E: T.145, S.147, C.148, V.190 Chain K: C.148 Ligands: GOL.35 Ligand excluded by PLIP GOL.18: 6 residues within 4Å: Chain F: D.80, R.81, I.98, W.141, K.171, L.181 Ligand excluded by PLIP GOL.21: 8 residues within 4Å: Chain G: D.80, R.81, I.98, E.139, W.141, K.171, I.173, L.181 Ligand excluded by PLIP GOL.22: 9 residues within 4Å: Chain B: L.3, V.7, L.43, A.102, G.103, F.106 Chain G: Q.30, A.31, I.32 Ligand excluded by PLIP GOL.23: 6 residues within 4Å: Chain C: C.148 Chain G: T.145, S.147, C.148, V.190 Ligands: GOL.11 Ligand excluded by PLIP GOL.24: 6 residues within 4Å: Chain H: D.80, R.81, I.98, W.141, K.171, L.181 Ligand excluded by PLIP GOL.27: 8 residues within 4Å: Chain I: D.80, R.81, I.98, E.139, W.141, K.171, I.173, L.181 Ligand excluded by PLIP GOL.28: 9 residues within 4Å: Chain F: L.3, V.7, L.43, A.102, G.103, F.106 Chain I: Q.30, A.31, I.32 Ligand excluded by PLIP GOL.29: 6 residues within 4Å: Chain A: C.148 Chain I: T.145, S.147, C.148, V.190 Ligands: GOL.5 Ligand excluded by PLIP GOL.30: 6 residues within 4Å: Chain J: D.80, R.81, I.98, W.141, K.171, L.181 Ligand excluded by PLIP GOL.33: 8 residues within 4Å: Chain K: D.80, R.81, I.98, E.139, W.141, K.171, I.173, L.181 Ligand excluded by PLIP GOL.34: 9 residues within 4Å: Chain D: L.3, V.7, L.43, A.102, G.103, F.106 Chain K: Q.30, A.31, I.32 Ligand excluded by PLIP GOL.35: 6 residues within 4Å: Chain E: C.148 Chain K: T.145, S.147, C.148, V.190 Ligands: GOL.17 Ligand excluded by PLIP GOL.36: 6 residues within 4Å: Chain L: D.80, R.81, I.98, W.141, K.171, L.181 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pedone, E. et al., Insights on a new PDI-like family: structural and functional analysis of a protein disulfide oxidoreductase from the bacterium Aquifex aeolicus. J.Mol.Biol. (2006)

Release Date

2006-07-18

Peptides

glutaredoxin-like protein: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

I
A

J
B

K
A

L
B

glutaredoxin-like protein

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