SMTL ID : 2az1.1

Structure of a halophilic nucleoside diphosphate kinase from Halobacterium salinarum

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-hexamer

Ligands

5 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: H.72, E.75, R.151 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.72, A:E.75, H2O.1 CA.2: 4 residues within 4Å: Chain C: A.154, F.157, D.158 Ligands: CA.3 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:A.154, C:F.157, C:D.158 CA.3: 2 residues within 4Å: Chain C: D.158 Ligands: CA.2 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.158, C:D.158 CA.4: 4 residues within 4Å: Chain D: A.154, F.157, D.158 Ligands: CA.5 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:A.154, D:F.157, D:D.158, H2O.3 CA.5: 2 residues within 4Å: Chain D: D.158 Ligands: CA.4 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:D.158, D:D.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Besir, H. et al., Structure of a halophilic nucleoside diphosphate kinase from Halobacterium salinarum. Febs Lett. (2005)

Release Date

2005-12-20

Peptides

Nucleoside diphosphate kinase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Nucleoside diphosphate kinase