SMTL ID : 2az5.1

Crystal Structure of TNF-alpha with a small molecule inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

2 x 307: 6,7-DIMETHYL-3-[(METHYL{2-[METHYL({1-[3-(TRIFLUOROMETHYL)PHENYL]-1H-INDOL-3-YL}METHYL)AMINO]ETHYL}AMINO)METHYL]-4H-CHROMEN-4-ONE(Non-covalent)

307.1: 17 residues within 4Å: Chain A: L.48, I.49, Y.50, S.51, Y.110, L.111, G.112, G.113, Y.142 Chain B: L.48, Y.50, S.51, Y.110, L.111, G.112, Y.142 Chain D: L.46 8 PLIP interactions: 3 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:Y.50, A:Y.110, A:Y.142, B:L.48, B:Y.50, B:Y.50, B:Y.110, B:Y.142 307.2: 19 residues within 4Å: Chain B: L.46, L.148 Chain C: L.48, I.49, Y.50, S.51, Q.52, Y.110, L.111, G.112, G.113, Y.142 Chain D: L.48, Y.50, S.51, Y.110, L.111, G.112, Y.142 9 PLIP interactions: 5 interactions with chain D, 4 interactions with chain C Hydrophobic interactions: D:L.48, D:Y.50, D:Y.50, D:Y.110, D:Y.142, C:Y.50, C:Y.110, C:Y.142 Halogen bonds: C:I.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

He, M.M. et al., Small-molecule inhibition of TNF-alpha. Science (2005)

Release Date

2005-11-29

Peptides

Tumor necrosis factor (TNF-alpha) (Tumor necrosis factor ligand superfamily member 2) (TNF-a) (Cachectin) [Contains: Tumor necrosis factor, membrane form; Tumor necrosis factor, soluble form]: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Tumor necrosis factor (TNF-alpha) (Tumor necrosis factor ligand superfamily member 2) (TNF-a) (Cachectin) [Contains: Tumor necrosis factor, membrane form; Tumor necrosis factor, soluble form]