- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-dimer
- Ligands
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.7: 7 residues within 4Å:- Chain B: S.351, A.352, D.354, N.356, S.357, S.358
- Ligands: SO4.3
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:S.351, B:D.354, B:S.358
MG.17: 7 residues within 4Å:- Chain D: S.351, A.352, D.354, N.356, S.357, S.358
- Ligands: SO4.13
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:S.351, D:D.354, D:S.358
- 2 x TRP: TRYPTOPHAN(Non-covalent)
TRP.8: 13 residues within 4Å:- Chain B: Y.159, T.160, G.161, R.162, G.163, Q.194, T.196, E.199, Q.284, I.307, C.309, Q.313, F.317
9 PLIP interactions:8 interactions with chain B, 1 Ligand-Ligand interactions- Hydrophobic interactions: B:Y.159, B:I.307, B:F.317
- Hydrogen bonds: B:Y.159, B:G.163, B:T.196, B:Q.284
- Water bridges: B:Q.313, W.8
TRP.18: 13 residues within 4Å:- Chain D: Y.159, T.160, G.161, R.162, G.163, Q.194, T.196, E.199, Q.284, I.307, C.309, Q.313, F.317
9 PLIP interactions:8 interactions with chain D, 1 Ligand-Ligand interactions- Hydrophobic interactions: D:Y.159, D:I.307, D:F.317
- Hydrogen bonds: D:Y.159, D:G.163, D:T.196, D:Q.284
- Water bridges: D:Q.313, W.18
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.9: 4 residues within 4Å:- Chain B: T.207, L.208, D.209
- Chain D: K.253
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain D- Hydrogen bonds: B:T.207, B:L.208, B:D.209, D:K.253
- Water bridges: B:Y.201
GOL.10: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)GOL.19: 4 residues within 4Å:- Chain B: K.253
- Chain D: T.207, L.208, D.209
5 PLIP interactions:4 interactions with chain D, 1 interactions with chain B- Hydrogen bonds: D:T.207, D:L.208, D:D.209, B:K.253
- Water bridges: D:Y.201
GOL.20: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yang, X.L. et al., Two conformations of a crystalline human tRNA synthetase-tRNA complex: implications for protein synthesis. Embo J. (2006)
- Release Date
- 2006-08-01
- Peptides
- Tryptophanyl-tRNA synthetase: BD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:B
BD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-dimer
- Ligands
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x TRP: TRYPTOPHAN(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yang, X.L. et al., Two conformations of a crystalline human tRNA synthetase-tRNA complex: implications for protein synthesis. Embo J. (2006)
- Release Date
- 2006-08-01
- Peptides
- Tryptophanyl-tRNA synthetase: BD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:B
BD
B