SMTL ID : 2b16.1

The crystal structure of 2,4-dinitrophenol in complex with the amyloidogenic variant Transthyretin Tyr78Phe

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-tetramer

Ligands

4 x DNF: 2,4-DINITROPHENOL(Non-covalent)

DNF.1: 12 residues within 4Å: Chain A: L.17, A.108, A.109, L.110, S.117, T.118, T.119 Chain C: L.17, A.108, L.110, S.117 Ligands: DNF.3 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: C:A.108, C:L.110 Hydrogen bonds: C:S.117, A:S.117, A:S.117 DNF.2: 11 residues within 4Å: Chain B: L.17, A.108, A.109, L.110, S.117, T.118, T.119 Chain D: A.108, L.110, S.117 Ligands: DNF.4 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain D Hydrogen bonds: B:S.117, D:S.117 Hydrophobic interactions: D:L.110 DNF.3: 12 residues within 4Å: Chain A: L.17, A.108, L.110, S.117 Chain C: L.17, A.108, A.109, L.110, S.117, T.118, T.119 Ligands: DNF.1 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: A:A.108, A:L.110 Hydrogen bonds: A:S.117, C:S.117, C:S.117 DNF.4: 11 residues within 4Å: Chain B: A.108, L.110, S.117 Chain D: L.17, A.108, A.109, L.110, S.117, T.118, T.119 Ligands: DNF.2 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain D Hydrophobic interactions: B:L.110 Hydrogen bonds: B:S.117, D:S.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Morais-de-Sa, E. et al., The binding of 2,4-dinitrophenol to wild-type and amyloidogenic transthyretin. ACTA CRYSTALLOGR.,SECT.D (2006)

Release Date

2006-07-18

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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