SMTL ID : 2b25.3 (2 other biounits)

Human putative tRNA(1-methyladenosine)methyltransferase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

4 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 20 residues within 4Å: Chain A: T.86, T.89, G.113, S.114, G.115, S.116, G.117, G.118, M.119, F.136, E.137, V.138, R.139, H.142, K.174, D.175, I.176, D.194, M.195 Ligands: UNX.2 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:T.89, A:G.113, A:G.113, A:G.115, A:S.116, A:G.117, A:G.118, A:M.119, A:V.138, A:D.175, A:I.176, A:D.194 Salt bridges: A:D.194 SAM.4: 19 residues within 4Å: Chain B: T.86, T.89, G.113, S.114, G.115, S.116, G.117, G.118, M.119, F.136, E.137, V.138, R.139, H.142, D.175, I.176, D.194, M.195 Ligands: UNX.5 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:T.89, B:G.113, B:G.115, B:S.116, B:G.117, B:G.118, B:M.119, B:V.138, B:H.142, B:D.175, B:I.176, B:D.194 Salt bridges: B:D.194 SAM.7: 20 residues within 4Å: Chain C: T.86, T.89, G.113, S.114, G.115, S.116, G.117, G.118, M.119, F.136, E.137, V.138, R.139, H.142, K.174, D.175, I.176, D.194, M.195 Ligands: UNX.8 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:G.113, C:G.113, C:G.115, C:S.116, C:G.117, C:G.118, C:M.119, C:V.138, C:D.175, C:I.176 Salt bridges: C:D.194 SAM.10: 19 residues within 4Å: Chain D: T.86, T.89, G.113, S.114, G.115, S.116, G.117, G.118, M.119, F.136, E.137, V.138, R.139, H.142, D.175, I.176, D.194, M.195 Ligands: UNX.11 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:T.89, D:G.113, D:G.115, D:S.116, D:G.117, D:G.118, D:M.119, D:V.138, D:H.142, D:D.175, D:I.176 Salt bridges: D:D.194

8 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 3 residues within 4Å: Chain A: M.195, L.196 Ligands: SAM.1 No protein-ligand interaction detected (PLIP) UNX.3: 2 residues within 4Å: Chain C: L.253, V.254 No protein-ligand interaction detected (PLIP) UNX.5: 3 residues within 4Å: Chain B: M.195, L.196 Ligands: SAM.4 No protein-ligand interaction detected (PLIP) UNX.6: 3 residues within 4Å: Chain B: V.219, V.220, Q.224 No protein-ligand interaction detected (PLIP) UNX.8: 3 residues within 4Å: Chain C: M.195, L.196 Ligands: SAM.7 No protein-ligand interaction detected (PLIP) UNX.9: 2 residues within 4Å: Chain A: L.253, V.254 No protein-ligand interaction detected (PLIP) UNX.11: 3 residues within 4Å: Chain D: M.195, L.196 Ligands: SAM.10 No protein-ligand interaction detected (PLIP) UNX.12: 3 residues within 4Å: Chain D: V.219, V.220, Q.224 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, H. et al., Human putative tRNA(1-methyladenosine)methyltransferase. To be Published

Release Date

2005-09-27

Peptides

hypothetical protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

hypothetical protein

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