SMTL ID : 2b3j.1 (1 other biounit)

Crystal Structure of Staphylococcus aureus tRNA Adenosine Deaminase, TadA, in Complex with RNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: A.8 Chain C: H.56, E.58, C.86, C.89 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.56, C:C.86, C:C.89, H2O.2 ZN.3: 5 residues within 4Å: Chain B: A.8 Chain D: H.56, E.58, C.86, C.89 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.56, D:C.86, D:C.89, H2O.4

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain C: C.86, V.87, G.110, C.112 Chain D: M.95, F.125, N.126 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:N.126, D:N.126, C:V.87, C:G.110 GOL.4: 7 residues within 4Å: Chain C: M.95, F.125, N.126 Chain D: C.86, V.87, G.110, C.112 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:V.87, D:G.110, C:N.126 Water bridges: C:N.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Losey, H.C. et al., Crystal structure of Staphylococcus aureus tRNA adenosine deaminase TadA in complex with RNA. Nat.Struct.Mol.Biol. (2006)

Release Date

2006-01-24

Peptides

tRNA adenosine deaminase: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

D
B

tRNA adenosine deaminase

Related Entries With Identical Sequence