SMTL ID : 2b50.1 (1 other biounit)

Human Nuclear Receptor-Ligand Complex 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: E.203, Q.206 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.203

2 x B7G: heptyl beta-D-glucopyranoside(Non-covalent)

B7G.2: 6 residues within 4Å: Chain A: F.106, L.107, N.108, V.111, T.112 Ligands: B7G.3 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.106, A:L.107 Hydrogen bonds: A:T.112, A:T.112 B7G.3: 10 residues within 4Å: Chain A: V.89, T.93, V.111, L.114, K.115, L.264, E.267, I.268, K.270 Ligands: B7G.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.89, A:L.114, A:K.115, A:L.264, A:I.268 Hydrogen bonds: A:E.267, A:K.270 Salt bridges: A:K.115

1 x VCA: VACCENIC ACID(Non-covalent)

VCA.4: 15 residues within 4Å: Chain A: L.51, W.60, V.77, F.78, R.80, C.81, T.85, H.119, F.123, V.137, V.144, H.245, M.249, L.265, Y.269 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.51, A:W.60, A:V.77, A:F.78, A:R.80, A:T.85, A:F.123, A:V.144 Hydrogen bonds: A:T.85 Salt bridges: A:H.119, A:H.245

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fyffe, S.A. et al., Recombinant Human PPAR-beta/delta Ligand-binding Domain is Locked in an Activated Conformation by Endogenous Fatty Acids. J.Mol.Biol. (2006)

Release Date

2006-02-14

Peptides

Peroxisome proliferator activated receptor delta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxisome proliferator activated receptor delta

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