SMTL ID : 2b5v.1

Crystal structure of glucose dehydrogenase from Haloferax mediterranei

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 23 residues within 4Å: Chain A: D.38, I.154, G.180, N.181, G.182, S.183, L.184, G.206, R.207, R.208, S.228, A.249, T.250, G.251, F.252, H.255, L.272, G.273, V.274, S.301, V.302, N.303 Chain B: V.292 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:N.181, A:N.181, A:L.184, A:G.185, A:R.207, A:R.208, A:S.228, A:L.272, A:V.274, A:N.303 Water bridges: A:G.39, A:G.39, A:N.181, A:G.182, A:S.183, A:S.183, A:R.207, A:S.228 Salt bridges: A:R.207, A:R.208 pi-Cation interactions: A:R.207 NAP.2: 23 residues within 4Å: Chain A: V.292 Chain B: D.38, I.154, G.180, N.181, G.182, S.183, L.184, G.206, R.207, R.208, S.228, A.249, T.250, G.251, F.252, H.255, L.272, G.273, V.274, S.301, V.302, N.303 21 PLIP interactions: 21 interactions with chain B Hydrogen bonds: B:N.181, B:N.181, B:L.184, B:G.185, B:R.207, B:R.208, B:S.228, B:L.272, B:V.274, B:N.303 Water bridges: B:G.39, B:G.39, B:N.181, B:G.182, B:S.183, B:S.183, B:R.207, B:S.228 Salt bridges: B:R.207, B:R.208 pi-Cation interactions: B:R.207

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Britton, K.L. et al., Analysis of protein solvent interactions in glucose dehydrogenase from the extreme halophile Haloferax mediterranei. Proc.Natl.Acad.Sci.Usa (2006)

Release Date

2006-04-04

Peptides

glucose dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

glucose dehydrogenase

Related Entries With Identical Sequence