SMTL ID : 2b60.1

Structure of HIV-1 protease mutant bound to Ritonavir

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: K.14, I.15, G.16, G.17, P.63, I.64, E.65 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.16, A:G.17, A:I.64 Water bridges: A:I.64

1 x RIT: RITONAVIR(Non-covalent)

RIT.2: 21 residues within 4Å: Chain A: D.25, G.27, A.28, D.30, I.32, I.47, G.48, G.49, I.50, P.81, A.82, I.84 Chain B: D.25, G.27, A.28, D.29, G.48, G.49, I.50, A.82, I.84 14 PLIP interactions: 6 interactions with chain A, 8 interactions with chain B Hydrophobic interactions: A:P.81, A:P.81, A:A.82, A:I.84, B:A.28, B:A.82, B:I.84 Hydrogen bonds: A:G.27, B:D.25, B:G.27, B:D.29, B:G.48 Water bridges: A:I.50, B:I.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Clemente, J.C. et al., In vivo, kinetic, and structural analysis of the development of ritonavir resistance. To be Published

Release Date

2006-11-14

Peptides

Gag-Pol polyprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Gag-Pol polyprotein