SMTL ID : 2b6c.1

Predicted DNA alkylation repair enzyme from Enterococcus faecalis.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: K.95, A.135, E.136, N.137, N.140 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.136, A:N.137, A:N.140 Salt bridges: A:K.95 SO4.2: 5 residues within 4Å: Chain A: P.52, K.53, R.85 Chain B: P.52, K.53 7 PLIP interactions: 3 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:K.53, A:K.53, A:R.85 Water bridges: B:E.54, B:R.85, A:K.53, A:E.54 SO4.3: 3 residues within 4Å: Chain A: K.66, T.67, E.68 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.67 Salt bridges: A:K.66 SO4.7: 5 residues within 4Å: Chain B: K.95, A.135, E.136, N.137, N.140 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.136, B:N.137, B:N.140 Salt bridges: B:K.95 SO4.8: 4 residues within 4Å: Chain B: R.184, Q.185, K.188, Y.214 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.214 Salt bridges: B:R.184, B:K.188, B:K.213

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 2 residues within 4Å: Chain A: A.34, R.37 Ligand excluded by PLIP

2 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.5: 5 residues within 4Å: Chain A: C.57, F.86, E.90, A.93, F.94 No protein-ligand interaction detected (PLIP) BME.9: 5 residues within 4Å: Chain B: C.57, F.86, E.90, A.93, F.94 No protein-ligand interaction detected (PLIP)

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 5 residues within 4Å: Chain A: S.187, K.188, P.191, Y.214, L.215 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.187, A:A.216 GOL.10: 4 residues within 4Å: Chain B: K.11, V.28, T.67, E.68 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.11, B:T.67 GOL.11: 2 residues within 4Å: Chain B: S.20, H.25 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.20, B:H.25 Water bridges: B:A.16 GOL.12: 9 residues within 4Å: Chain A: H.49, N.82, R.85 Chain B: H.49, Q.81, N.82, V.83, Q.84, R.85 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:N.82, B:Q.81, B:Q.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Osipiuk, J. et al., Xray structure of predicted DNA alkylation repair enzyme from Enterococcus faecalis. To be Published

Release Date

2005-11-15

Peptides

hypothetical protein EF3068: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

hypothetical protein EF3068