SMTL ID : 2b6o.1

Electron crystallographic structure of lens Aquaporin-0 (AQP0) (lens MIP) at 1.9A resolution, in a closed pore state

Coordinates

PDB Format Compare

Method

ELECTRON CRYSTALLOGRAPHY 1.90 Å

Oligo State

homo-octamer

Ligands

72 x MC3: 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)(Non-functional Binders)

MC3.1: 6 residues within 4Å: Chain A: R.196 Chain C: W.202 Ligands: MC3.6, MC3.7, MC3.9, MC3.33 Ligand excluded by PLIP MC3.2: 11 residues within 4Å: Chain A: A.102, V.103, Y.105, S.106 Chain C: S.126, G.128, Q.129, I.132, F.136 Ligands: MC3.7, MC3.47 Ligand excluded by PLIP MC3.3: 16 residues within 4Å: Chain A: L.83, L.84, I.87, V.90, V.91, L.94, L.237, K.238 Ligands: MC3.4, MC3.8, MC3.21, MC3.30, MC3.31, MC3.33, MC3.35, MC3.36 Ligand excluded by PLIP MC3.4: 15 residues within 4Å: Chain A: R.5, S.6, F.9, W.10, L.84, C.88, V.91 Chain C: L.83, L.234, L.237, K.238 Ligands: MC3.3, MC3.9, MC3.21, MC3.33 Ligand excluded by PLIP MC3.5: 13 residues within 4Å: Chain A: A.7, W.10, R.11, I.13, F.14, F.17, L.95 Chain C: V.77, F.136, L.139, L.217, L.218, F.221 Ligand excluded by PLIP MC3.6: 11 residues within 4Å: Chain C: R.196, F.198, H.201, W.202 Ligands: MC3.1, MC3.9, MC3.19, MC3.21, MC3.22, MC3.27, MC3.42 Ligand excluded by PLIP MC3.7: 15 residues within 4Å: Chain A: L.95, V.98, A.99, A.102, Y.105, I.193, L.194, T.195, R.196 Chain C: V.127, W.202, V.209, I.210 Ligands: MC3.1, MC3.2 Ligand excluded by PLIP MC3.8: 4 residues within 4Å: Ligands: MC3.3, MC3.21, MC3.26, MC3.35 Ligand excluded by PLIP MC3.9: 9 residues within 4Å: Chain A: R.196 Ligands: MC3.1, MC3.4, MC3.6, MC3.18, MC3.21, MC3.27, MC3.33, MC3.36 Ligand excluded by PLIP MC3.10: 6 residues within 4Å: Chain B: R.196 Chain D: W.202 Ligands: MC3.15, MC3.16, MC3.18, MC3.24 Ligand excluded by PLIP MC3.11: 11 residues within 4Å: Chain B: A.102, V.103, Y.105, S.106 Chain D: S.126, G.128, Q.129, I.132, F.136 Ligands: MC3.16, MC3.38 Ligand excluded by PLIP MC3.12: 16 residues within 4Å: Chain B: L.83, L.84, I.87, V.90, V.91, L.94, L.237, K.238 Ligands: MC3.13, MC3.17, MC3.21, MC3.22, MC3.24, MC3.26, MC3.27, MC3.30 Ligand excluded by PLIP MC3.13: 15 residues within 4Å: Chain B: R.5, S.6, F.9, W.10, L.84, C.88, V.91 Chain D: L.83, L.234, L.237, K.238 Ligands: MC3.12, MC3.18, MC3.24, MC3.30 Ligand excluded by PLIP MC3.14: 13 residues within 4Å: Chain B: A.7, W.10, R.11, I.13, F.14, F.17, L.95 Chain D: V.77, F.136, L.139, L.217, L.218, F.221 Ligand excluded by PLIP MC3.15: 11 residues within 4Å: Chain D: R.196, F.198, H.201, W.202 Ligands: MC3.10, MC3.18, MC3.28, MC3.30, MC3.31, MC3.36, MC3.51 Ligand excluded by PLIP MC3.16: 15 residues within 4Å: Chain B: L.95, V.98, A.99, A.102, Y.105, I.193, L.194, T.195, R.196 Chain D: V.127, W.202, V.209, I.210 Ligands: MC3.10, MC3.11 Ligand excluded by PLIP MC3.17: 4 residues within 4Å: Ligands: MC3.12, MC3.26, MC3.30, MC3.35 Ligand excluded by PLIP MC3.18: 9 residues within 4Å: Chain B: R.196 Ligands: MC3.9, MC3.10, MC3.13, MC3.15, MC3.24, MC3.27, MC3.30, MC3.36 Ligand excluded by PLIP MC3.19: 6 residues within 4Å: Chain B: W.202 Chain C: R.196 Ligands: MC3.6, MC3.24, MC3.25, MC3.27 Ligand excluded by PLIP MC3.20: 11 residues within 4Å: Chain B: S.126, G.128, Q.129, I.132, F.136 Chain C: A.102, V.103, Y.105, S.106 Ligands: MC3.25, MC3.56 Ligand excluded by PLIP MC3.21: 16 residues within 4Å: Chain C: L.83, L.84, I.87, V.90, V.91, L.94, L.237, K.238 Ligands: MC3.3, MC3.4, MC3.6, MC3.8, MC3.9, MC3.12, MC3.22, MC3.26 Ligand excluded by PLIP MC3.22: 15 residues within 4Å: Chain B: L.83, L.234, L.237, K.238 Chain C: R.5, S.6, F.9, W.10, L.84, C.88, V.91 Ligands: MC3.6, MC3.12, MC3.21, MC3.27 Ligand excluded by PLIP MC3.23: 13 residues within 4Å: Chain B: V.77, F.136, L.139, L.217, L.218, F.221 Chain C: A.7, W.10, R.11, I.13, F.14, F.17, L.95 Ligand excluded by PLIP MC3.24: 11 residues within 4Å: Chain B: R.196, F.198, H.201, W.202 Ligands: MC3.10, MC3.12, MC3.13, MC3.18, MC3.19, MC3.27, MC3.69 Ligand excluded by PLIP MC3.25: 15 residues within 4Å: Chain B: V.127, W.202, V.209, I.210 Chain C: L.95, V.98, A.99, A.102, Y.105, I.193, L.194, T.195, R.196 Ligands: MC3.19, MC3.20 Ligand excluded by PLIP MC3.26: 4 residues within 4Å: Ligands: MC3.8, MC3.12, MC3.17, MC3.21 Ligand excluded by PLIP MC3.27: 9 residues within 4Å: Chain C: R.196 Ligands: MC3.6, MC3.9, MC3.12, MC3.18, MC3.19, MC3.22, MC3.24, MC3.36 Ligand excluded by PLIP MC3.28: 6 residues within 4Å: Chain A: W.202 Chain D: R.196 Ligands: MC3.15, MC3.33, MC3.34, MC3.36 Ligand excluded by PLIP MC3.29: 11 residues within 4Å: Chain A: S.126, G.128, Q.129, I.132, F.136 Chain D: A.102, V.103, Y.105, S.106 Ligands: MC3.34, MC3.65 Ligand excluded by PLIP MC3.30: 16 residues within 4Å: Chain D: L.83, L.84, I.87, V.90, V.91, L.94, L.237, K.238 Ligands: MC3.3, MC3.12, MC3.13, MC3.15, MC3.17, MC3.18, MC3.31, MC3.35 Ligand excluded by PLIP MC3.31: 15 residues within 4Å: Chain A: L.83, L.234, L.237, K.238 Chain D: R.5, S.6, F.9, W.10, L.84, C.88, V.91 Ligands: MC3.3, MC3.15, MC3.30, MC3.36 Ligand excluded by PLIP MC3.32: 13 residues within 4Å: Chain A: V.77, F.136, L.139, L.217, L.218, F.221 Chain D: A.7, W.10, R.11, I.13, F.14, F.17, L.95 Ligand excluded by PLIP MC3.33: 11 residues within 4Å: Chain A: R.196, F.198, H.201, W.202 Ligands: MC3.1, MC3.3, MC3.4, MC3.9, MC3.28, MC3.36, MC3.60 Ligand excluded by PLIP MC3.34: 15 residues within 4Å: Chain A: V.127, W.202, V.209, I.210 Chain D: L.95, V.98, A.99, A.102, Y.105, I.193, L.194, T.195, R.196 Ligands: MC3.28, MC3.29 Ligand excluded by PLIP MC3.35: 4 residues within 4Å: Ligands: MC3.3, MC3.8, MC3.17, MC3.30 Ligand excluded by PLIP MC3.36: 9 residues within 4Å: Chain D: R.196 Ligands: MC3.3, MC3.9, MC3.15, MC3.18, MC3.27, MC3.28, MC3.31, MC3.33 Ligand excluded by PLIP MC3.37: 6 residues within 4Å: Chain E: R.196 Chain G: W.202 Ligands: MC3.42, MC3.43, MC3.45, MC3.69 Ligand excluded by PLIP MC3.38: 11 residues within 4Å: Chain E: A.102, V.103, Y.105, S.106 Chain G: S.126, G.128, Q.129, I.132, F.136 Ligands: MC3.11, MC3.43 Ligand excluded by PLIP MC3.39: 16 residues within 4Å: Chain E: L.83, L.84, I.87, V.90, V.91, L.94, L.237, K.238 Ligands: MC3.40, MC3.44, MC3.57, MC3.66, MC3.67, MC3.69, MC3.71, MC3.72 Ligand excluded by PLIP MC3.40: 15 residues within 4Å: Chain E: R.5, S.6, F.9, W.10, L.84, C.88, V.91 Chain G: L.83, L.234, L.237, K.238 Ligands: MC3.39, MC3.45, MC3.57, MC3.69 Ligand excluded by PLIP MC3.41: 13 residues within 4Å: Chain E: A.7, W.10, R.11, I.13, F.14, F.17, L.95 Chain G: V.77, F.136, L.139, L.217, L.218, F.221 Ligand excluded by PLIP MC3.42: 11 residues within 4Å: Chain G: R.196, F.198, H.201, W.202 Ligands: MC3.6, MC3.37, MC3.45, MC3.55, MC3.57, MC3.58, MC3.63 Ligand excluded by PLIP MC3.43: 15 residues within 4Å: Chain E: L.95, V.98, A.99, A.102, Y.105, I.193, L.194, T.195, R.196 Chain G: V.127, W.202, V.209, I.210 Ligands: MC3.37, MC3.38 Ligand excluded by PLIP MC3.44: 4 residues within 4Å: Ligands: MC3.39, MC3.57, MC3.62, MC3.71 Ligand excluded by PLIP MC3.45: 9 residues within 4Å: Chain E: R.196 Ligands: MC3.37, MC3.40, MC3.42, MC3.54, MC3.57, MC3.63, MC3.69, MC3.72 Ligand excluded by PLIP MC3.46: 6 residues within 4Å: Chain F: R.196 Chain H: W.202 Ligands: MC3.51, MC3.52, MC3.54, MC3.60 Ligand excluded by PLIP MC3.47: 11 residues within 4Å: Chain F: A.102, V.103, Y.105, S.106 Chain H: S.126, G.128, Q.129, I.132, F.136 Ligands: MC3.2, MC3.52 Ligand excluded by PLIP MC3.48: 16 residues within 4Å: Chain F: L.83, L.84, I.87, V.90, V.91, L.94, L.237, K.238 Ligands: MC3.49, MC3.53, MC3.57, MC3.58, MC3.60, MC3.62, MC3.63, MC3.66 Ligand excluded by PLIP MC3.49: 15 residues within 4Å: Chain F: R.5, S.6, F.9, W.10, L.84, C.88, V.91 Chain H: L.83, L.234, L.237, K.238 Ligands: MC3.48, MC3.54, MC3.60, MC3.66 Ligand excluded by PLIP MC3.50: 13 residues within 4Å: Chain F: A.7, W.10, R.11, I.13, F.14, F.17, L.95 Chain H: V.77, F.136, L.139, L.217, L.218, F.221 Ligand excluded by PLIP MC3.51: 11 residues within 4Å: Chain H: R.196, F.198, H.201, W.202 Ligands: MC3.15, MC3.46, MC3.54, MC3.64, MC3.66, MC3.67, MC3.72 Ligand excluded by PLIP MC3.52: 15 residues within 4Å: Chain F: L.95, V.98, A.99, A.102, Y.105, I.193, L.194, T.195, R.196 Chain H: V.127, W.202, V.209, I.210 Ligands: MC3.46, MC3.47 Ligand excluded by PLIP MC3.53: 4 residues within 4Å: Ligands: MC3.48, MC3.62, MC3.66, MC3.71 Ligand excluded by PLIP MC3.54: 9 residues within 4Å: Chain F: R.196 Ligands: MC3.45, MC3.46, MC3.49, MC3.51, MC3.60, MC3.63, MC3.66, MC3.72 Ligand excluded by PLIP MC3.55: 6 residues within 4Å: Chain F: W.202 Chain G: R.196 Ligands: MC3.42, MC3.60, MC3.61, MC3.63 Ligand excluded by PLIP MC3.56: 11 residues within 4Å: Chain F: S.126, G.128, Q.129, I.132, F.136 Chain G: A.102, V.103, Y.105, S.106 Ligands: MC3.20, MC3.61 Ligand excluded by PLIP MC3.57: 16 residues within 4Å: Chain G: L.83, L.84, I.87, V.90, V.91, L.94, L.237, K.238 Ligands: MC3.39, MC3.40, MC3.42, MC3.44, MC3.45, MC3.48, MC3.58, MC3.62 Ligand excluded by PLIP MC3.58: 15 residues within 4Å: Chain F: L.83, L.234, L.237, K.238 Chain G: R.5, S.6, F.9, W.10, L.84, C.88, V.91 Ligands: MC3.42, MC3.48, MC3.57, MC3.63 Ligand excluded by PLIP MC3.59: 13 residues within 4Å: Chain F: V.77, F.136, L.139, L.217, L.218, F.221 Chain G: A.7, W.10, R.11, I.13, F.14, F.17, L.95 Ligand excluded by PLIP MC3.60: 11 residues within 4Å: Chain F: R.196, F.198, H.201, W.202 Ligands: MC3.33, MC3.46, MC3.48, MC3.49, MC3.54, MC3.55, MC3.63 Ligand excluded by PLIP MC3.61: 15 residues within 4Å: Chain F: V.127, W.202, V.209, I.210 Chain G: L.95, V.98, A.99, A.102, Y.105, I.193, L.194, T.195, R.196 Ligands: MC3.55, MC3.56 Ligand excluded by PLIP MC3.62: 4 residues within 4Å: Ligands: MC3.44, MC3.48, MC3.53, MC3.57 Ligand excluded by PLIP MC3.63: 9 residues within 4Å: Chain G: R.196 Ligands: MC3.42, MC3.45, MC3.48, MC3.54, MC3.55, MC3.58, MC3.60, MC3.72 Ligand excluded by PLIP MC3.64: 6 residues within 4Å: Chain E: W.202 Chain H: R.196 Ligands: MC3.51, MC3.69, MC3.70, MC3.72 Ligand excluded by PLIP MC3.65: 11 residues within 4Å: Chain E: S.126, G.128, Q.129, I.132, F.136 Chain H: A.102, V.103, Y.105, S.106 Ligands: MC3.29, MC3.70 Ligand excluded by PLIP MC3.66: 16 residues within 4Å: Chain H: L.83, L.84, I.87, V.90, V.91, L.94, L.237, K.238 Ligands: MC3.39, MC3.48, MC3.49, MC3.51, MC3.53, MC3.54, MC3.67, MC3.71 Ligand excluded by PLIP MC3.67: 15 residues within 4Å: Chain E: L.83, L.234, L.237, K.238 Chain H: R.5, S.6, F.9, W.10, L.84, C.88, V.91 Ligands: MC3.39, MC3.51, MC3.66, MC3.72 Ligand excluded by PLIP MC3.68: 13 residues within 4Å: Chain E: V.77, F.136, L.139, L.217, L.218, F.221 Chain H: A.7, W.10, R.11, I.13, F.14, F.17, L.95 Ligand excluded by PLIP MC3.69: 11 residues within 4Å: Chain E: R.196, F.198, H.201, W.202 Ligands: MC3.24, MC3.37, MC3.39, MC3.40, MC3.45, MC3.64, MC3.72 Ligand excluded by PLIP MC3.70: 15 residues within 4Å: Chain E: V.127, W.202, V.209, I.210 Chain H: L.95, V.98, A.99, A.102, Y.105, I.193, L.194, T.195, R.196 Ligands: MC3.64, MC3.65 Ligand excluded by PLIP MC3.71: 4 residues within 4Å: Ligands: MC3.39, MC3.44, MC3.53, MC3.66 Ligand excluded by PLIP MC3.72: 9 residues within 4Å: Chain H: R.196 Ligands: MC3.39, MC3.45, MC3.51, MC3.54, MC3.63, MC3.64, MC3.67, MC3.69 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gonen, T. et al., Lipid-protein interactions in double-layered two-dimensional AQP0 crystals. Nature (2005)

Release Date

2005-12-06

Peptides

Lens fiber major intrinsic protein: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Lens fiber major intrinsic protein

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