SMTL ID : 2b7z.1

Structure of HIV-1 protease mutant bound to indinavir

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

1 x MK1: N-[2(R)-HYDROXY-1(S)-INDANYL]-5-[(2(S)-TERTIARY BUTYLAMINOCARBONYL)-4(3-PYRIDYLMETHYL)PIPERAZINO]-4(S)-HYDROXY-2(R)-PHENYLMETHYLPENTANAMIDE(Non-covalent)

MK1.1: 25 residues within 4Å: Chain A: R.8, D.25, G.27, A.28, D.29, D.30, I.32, I.47, G.48, G.49, I.50, P.81, A.82, V.84 Chain B: R.8, D.25, G.27, A.28, D.30, I.47, G.48, G.49, I.50, P.81, A.82 23 PLIP interactions: 15 interactions with chain A, 8 interactions with chain B Hydrophobic interactions: A:A.28, A:D.30, A:I.32, A:I.47, A:I.50, A:I.50, A:P.81, A:V.84, B:A.28, B:I.47, B:I.50, B:P.81, B:A.82 Hydrogen bonds: A:R.8, A:D.25, A:G.27, A:D.29, A:I.50 Water bridges: A:R.8, B:I.50, B:I.50 Salt bridges: A:D.25, B:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Clemente, J.C. et al., In vivo, kinetic, and structural analysis of the development of ritonavir resistance. To be Published

Release Date

2006-11-14

Peptides

HIV-1 protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

HIV-1 protease