SMTL ID : 2b8m.1

Crystal structure of a rmlc-like cupin family protein with a double-stranded beta-helix fold (mj0764) from methanocaldococcus jannaschii at 1.70 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: K.20, Q.28, N.46, K.100, P.104 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Q.28, A:N.46 Water bridges: A:K.20, A:K.20, A:K.20, A:K.100, A:K.100 Salt bridges: A:K.20, A:K.100 SO4.2: 1 residues within 4Å: Chain A: K.42 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.42, A:K.42 Salt bridges: A:K.42 SO4.3: 5 residues within 4Å: Chain A: H.26, P.102, K.106 Chain B: P.102 Ligands: SO4.10 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.26 SO4.8: 5 residues within 4Å: Chain B: K.20, Q.28, N.46, K.100, P.104 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:Q.28, B:N.46 Water bridges: B:K.20, B:K.20, B:K.20, B:K.100, B:K.100 Salt bridges: B:K.20, B:K.100 SO4.9: 1 residues within 4Å: Chain B: K.42 3 PLIP interactions: 3 interactions with chain B Water bridges: B:K.42, B:K.42 Salt bridges: B:K.42 SO4.10: 5 residues within 4Å: Chain A: P.102 Chain B: H.26, P.102, K.106 Ligands: SO4.3 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:H.26

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 5 residues within 4Å: Chain A: T.24, H.26 Chain B: Y.48, H.50, Y.77 Ligand excluded by PLIP CL.11: 5 residues within 4Å: Chain A: Y.48, H.50, Y.77 Chain B: T.24, H.26 Ligand excluded by PLIP

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 3 residues within 4Å: Chain A: V.17, V.18, E.19 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.18 Water bridges: A:K.16 EDO.6: 3 residues within 4Å: Chain A: Q.65, E.66, H.68 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.66 EDO.7: 4 residues within 4Å: Chain A: H.43, M.84, I.86, V.98 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.43 EDO.12: 3 residues within 4Å: Chain B: V.17, V.18, E.19 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:V.18 Water bridges: B:K.16 EDO.13: 3 residues within 4Å: Chain B: Q.65, E.66, H.68 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.66 EDO.14: 4 residues within 4Å: Chain B: H.43, M.84, I.86, V.98 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of (1499583) from METHANOCOCCUS JANNASCHII at 1.70 A resolution. To be published

Release Date

2005-11-01

Peptides

Hypothetical protein MJ0764: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Hypothetical protein MJ0764