SMTL ID : 2bbv.3 (4 other biounits)

THE REFINED THREE-DIMENSIONAL STRUCTURE OF AN INSECT VIRUS AT 2.8 ANGSTROMS RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-18-18-mer

Ligands

30 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain B: D.221, G.273 Chain D: D.161 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain D Metal complexes: B:D.221, B:G.273, D:D.161 CA.2: 3 residues within 4Å: Chain B: E.251 Chain D: E.251 Chain F: E.251 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain F Metal complexes: B:E.251, F:E.251 CA.3: 3 residues within 4Å: Chain D: D.221, G.273 Chain F: D.161 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain F Metal complexes: D:D.221, D:G.273, F:D.161 CA.4: 3 residues within 4Å: Chain B: D.161 Chain F: D.221, G.273 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:D.221, F:G.273 CA.5: 6 residues within 4Å: Chain B: D.249, E.251 Chain D: D.249, E.251 Chain F: D.249, E.251 4 PLIP interactions: 1 interactions with chain B, 1 interactions with chain D, 2 interactions with chain F Metal complexes: B:D.249, D:D.249, F:D.249, F:E.251 CA.6: 3 residues within 4Å: Chain I: D.221, G.273 Chain K: D.161 3 PLIP interactions: 1 interactions with chain K, 2 interactions with chain I Metal complexes: K:D.161, I:D.221, I:G.273 CA.7: 3 residues within 4Å: Chain I: E.251 Chain K: E.251 Chain M: E.251 2 PLIP interactions: 1 interactions with chain I, 1 interactions with chain M Metal complexes: I:E.251, M:E.251 CA.8: 3 residues within 4Å: Chain K: D.221, G.273 Chain M: D.161 3 PLIP interactions: 2 interactions with chain K, 1 interactions with chain M Metal complexes: K:D.221, K:G.273, M:D.161 CA.9: 3 residues within 4Å: Chain I: D.161 Chain M: D.221, G.273 2 PLIP interactions: 2 interactions with chain M Metal complexes: M:D.221, M:G.273 CA.10: 6 residues within 4Å: Chain I: D.249, E.251 Chain K: D.249, E.251 Chain M: D.249, E.251 4 PLIP interactions: 1 interactions with chain I, 2 interactions with chain M, 1 interactions with chain K Metal complexes: I:D.249, M:D.249, M:E.251, K:D.249 CA.11: 3 residues within 4Å: Chain P: D.221, G.273 Chain R: D.161 3 PLIP interactions: 2 interactions with chain P, 1 interactions with chain R Metal complexes: P:D.221, P:G.273, R:D.161 CA.12: 3 residues within 4Å: Chain P: E.251 Chain R: E.251 Chain T: E.251 2 PLIP interactions: 1 interactions with chain P, 1 interactions with chain T Metal complexes: P:E.251, T:E.251 CA.13: 3 residues within 4Å: Chain R: D.221, G.273 Chain T: D.161 3 PLIP interactions: 2 interactions with chain R, 1 interactions with chain T Metal complexes: R:D.221, R:G.273, T:D.161 CA.14: 3 residues within 4Å: Chain P: D.161 Chain T: D.221, G.273 2 PLIP interactions: 2 interactions with chain T Metal complexes: T:D.221, T:G.273 CA.15: 6 residues within 4Å: Chain P: D.249, E.251 Chain R: D.249, E.251 Chain T: D.249, E.251 4 PLIP interactions: 2 interactions with chain T, 1 interactions with chain R, 1 interactions with chain P Metal complexes: T:D.249, T:E.251, R:D.249, P:D.249 CA.16: 3 residues within 4Å: Chain W: D.221, G.273 Chain Y: D.161 3 PLIP interactions: 2 interactions with chain W, 1 interactions with chain Y Metal complexes: W:D.221, W:G.273, Y:D.161 CA.17: 3 residues within 4Å: Chain 0: E.251 Chain W: E.251 Chain Y: E.251 2 PLIP interactions: 1 interactions with chain 0, 1 interactions with chain W Metal complexes: 0:E.251, W:E.251 CA.18: 3 residues within 4Å: Chain 0: D.161 Chain Y: D.221, G.273 3 PLIP interactions: 2 interactions with chain Y, 1 interactions with chain 0 Metal complexes: Y:D.221, Y:G.273, 0:D.161 CA.19: 3 residues within 4Å: Chain 0: D.221, G.273 Chain W: D.161 2 PLIP interactions: 2 interactions with chain 0 Metal complexes: 0:D.221, 0:G.273 CA.20: 6 residues within 4Å: Chain 0: D.249, E.251 Chain W: D.249, E.251 Chain Y: D.249, E.251 4 PLIP interactions: 1 interactions with chain Y, 2 interactions with chain 0, 1 interactions with chain W Metal complexes: Y:D.249, 0:D.249, 0:E.251, W:D.249 CA.21: 3 residues within 4Å: Chain 3: D.221, G.273 Chain 5: D.161 3 PLIP interactions: 1 interactions with chain 5, 2 interactions with chain 3 Metal complexes: 5:D.161, 3:D.221, 3:G.273 CA.22: 3 residues within 4Å: Chain 3: E.251 Chain 5: E.251 Chain 7: E.251 2 PLIP interactions: 1 interactions with chain 3, 1 interactions with chain 7 Metal complexes: 3:E.251, 7:E.251 CA.23: 3 residues within 4Å: Chain 5: D.221, G.273 Chain 7: D.161 3 PLIP interactions: 2 interactions with chain 5, 1 interactions with chain 7 Metal complexes: 5:D.221, 5:G.273, 7:D.161 CA.24: 3 residues within 4Å: Chain 3: D.161 Chain 7: D.221, G.273 2 PLIP interactions: 2 interactions with chain 7 Metal complexes: 7:D.221, 7:G.273 CA.25: 6 residues within 4Å: Chain 3: D.249, E.251 Chain 5: D.249, E.251 Chain 7: D.249, E.251 4 PLIP interactions: 2 interactions with chain 7, 1 interactions with chain 3, 1 interactions with chain 5 Metal complexes: 7:D.249, 7:E.251, 3:D.249, 5:D.249 CA.26: 3 residues within 4Å: Chain a: D.221, G.273 Chain c: D.161 3 PLIP interactions: 2 interactions with chain a, 1 interactions with chain c Metal complexes: a:D.221, a:G.273, c:D.161 CA.27: 3 residues within 4Å: Chain a: E.251 Chain c: E.251 Chain e: E.251 2 PLIP interactions: 1 interactions with chain e, 1 interactions with chain a Metal complexes: e:E.251, a:E.251 CA.28: 3 residues within 4Å: Chain c: D.221, G.273 Chain e: D.161 3 PLIP interactions: 2 interactions with chain c, 1 interactions with chain e Metal complexes: c:D.221, c:G.273, e:D.161 CA.29: 3 residues within 4Å: Chain a: D.161 Chain e: D.221, G.273 2 PLIP interactions: 2 interactions with chain e Metal complexes: e:D.221, e:G.273 CA.30: 6 residues within 4Å: Chain a: D.249, E.251 Chain c: D.249, E.251 Chain e: D.249, E.251 4 PLIP interactions: 2 interactions with chain e, 1 interactions with chain c, 1 interactions with chain a Metal complexes: e:D.249, e:E.251, c:D.249, a:D.249

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wery, J.P. et al., The refined three-dimensional structure of an insect virus at 2.8 A resolution. J.Mol.Biol. (1994)

Release Date

1994-08-31

Peptides

PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN): BDFIKMPRTWY0357ace
PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN): CEGJLNQSUXZ1468bdf

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
A

D
B

F
C

I
A

K
B

M
C

P
A

R
B

T
C

W
A

Y
B

0
C

3
A

5
B

7
C

a
A

c
B

e
C

C
D

E
E

G
F

J
D

L
E

N
F

Q
D

S
E

U
F

X
D

Z
E

1
F

4
D

6
E

8
F

b
D

d
E

f
F

PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN)

PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN)

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