SMTL ID : 2bc4.2 (2 other biounits)

Crystal structure of HLA-DM

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.27 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NDG- BMA- BMA: beta-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NDG-BMA-BMA.1: 5 residues within 4Å: Chain A: D.12, L.13, N.15 Chain B: L.12, K.20 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.15 Water bridges: A:D.12, A:N.15

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: D.68 Ligand excluded by PLIP CL.3: 1 residues within 4Å: Chain B: H.145 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nicholson, M.J. et al., Small molecules that enhance the catalytic efficiency of HLA-DM. J.Immunol. (2006)

Release Date

2006-05-23

Peptides

HLA class II histocompatibility antigen, DM alpha chain: A
HLA class II histocompatibility antigen, DM beta chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

HLA class II histocompatibility antigen, DM alpha chain

HLA class II histocompatibility antigen, DM beta chain

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