SMTL ID : 2bej.1

Structure of the bacterial chromosome segregation protein Soj

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 16 residues within 4Å: Chain A: G.16, G.17, V.18, G.19, K.20, T.21, T.22, M.178, I.206, P.207, R.208, N.209, L.212, A.213, P.216 Ligands: MG.2 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:G.17, A:V.18, A:G.19, A:K.20, A:T.21, A:T.22, A:T.22, A:M.178, A:P.207, A:N.209 Water bridges: A:T.21, A:T.21 Salt bridges: A:K.20 ADP.3: 16 residues within 4Å: Chain B: G.16, G.17, V.18, G.19, K.20, T.21, T.22, M.178, I.206, P.207, R.208, N.209, L.212, A.213, P.216 Ligands: MG.4 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:G.17, B:V.18, B:G.19, B:K.20, B:T.21, B:T.21, B:T.22, B:T.22, B:M.178, B:P.207, B:N.209 Salt bridges: B:K.20

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: T.21, D.118 Ligands: ADP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.21, H2O.1, H2O.2, H2O.4, H2O.4 MG.4: 3 residues within 4Å: Chain B: T.21, D.118 Ligands: ADP.3 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:T.21, H2O.5, H2O.6, H2O.8, H2O.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leonard, T.A. et al., Bacterial Chromosome Segregation: Structure and DNA Binding of the Soj Dimer--A Conserved Biological Switch. Embo J. (2005)

Release Date

2005-01-12

Peptides

SEGREGATION PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

SEGREGATION PROTEIN

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