- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PRO: PROLINE(Non-covalent)
- 4 x LEU: LEUCINE(Non-covalent)
LEU.2: 8 residues within 4Å:- Chain A: H.350, G.351, H.354, Y.366, R.370
- Chain B: W.88
- Chain C: R.153
- Ligands: PRO.1
6 PLIP interactions:4 interactions with chain A, 1 interactions with chain C, 1 Ligand-Ligand interactions- Hydrogen bonds: A:G.351, A:G.351
- Water bridges: A:E.383, L.2
- Salt bridges: A:R.370, C:R.153
LEU.10: 8 residues within 4Å:- Chain A: W.88
- Chain B: H.350, G.351, H.354, Y.366, R.370
- Chain D: R.153
- Ligands: PRO.9
6 PLIP interactions:1 interactions with chain D, 4 interactions with chain B, 1 Ligand-Ligand interactions- Salt bridges: D:R.153, B:R.370
- Hydrogen bonds: B:G.351, B:G.351
- Water bridges: B:E.383, L.10
LEU.18: 8 residues within 4Å:- Chain A: R.153
- Chain C: H.350, G.351, H.354, Y.366, R.370
- Chain D: W.88
- Ligands: PRO.17
6 PLIP interactions:1 Ligand-Ligand interactions, 1 interactions with chain A, 4 interactions with chain C- Water bridges: L.18, C:E.383
- Salt bridges: A:R.153, C:R.370
- Hydrogen bonds: C:G.351, C:G.351
LEU.26: 8 residues within 4Å:- Chain B: R.153
- Chain C: W.88
- Chain D: H.350, G.351, H.354, Y.366, R.370
- Ligands: PRO.25
6 PLIP interactions:4 interactions with chain D, 1 interactions with chain B, 1 Ligand-Ligand interactions- Hydrogen bonds: D:G.351, D:G.351
- Water bridges: D:E.383, L.26
- Salt bridges: D:R.370, B:R.153
- 16 x ZN: ZINC ION(Non-covalent)
ZN.3: 6 residues within 4Å:- Chain A: Y.229, D.260, D.271, T.273, E.406
- Ligands: ZN.4
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.260, A:D.260, A:D.271, A:E.406, H2O.6
ZN.4: 6 residues within 4Å:- Chain A: D.271, H.354, T.381, E.383, E.406
- Ligands: ZN.3
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.271, A:H.354, A:E.383, A:E.406, H2O.6
ZN.7: 1 residues within 4Å:- Chain A: H.71
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:H.71
ZN.8: 3 residues within 4Å:- Chain A: H.243, H.361
- Ligands: PRO.1
4 PLIP interactions:2 interactions with chain A, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions- Metal complexes: A:H.243, A:H.361, PRO.1, H2O.6
ZN.11: 6 residues within 4Å:- Chain B: Y.229, D.260, D.271, T.273, E.406
- Ligands: ZN.12
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.260, B:D.260, B:D.271, B:E.406, H2O.12
ZN.12: 6 residues within 4Å:- Chain B: D.271, H.354, T.381, E.383, E.406
- Ligands: ZN.11
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.271, B:H.354, B:E.383, B:E.406, H2O.12
ZN.15: 1 residues within 4Å:- Chain B: H.71
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:H.71
ZN.16: 3 residues within 4Å:- Chain B: H.243, H.361
- Ligands: PRO.9
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:H.243, B:H.361, H2O.12
ZN.19: 6 residues within 4Å:- Chain C: Y.229, D.260, D.271, T.273, E.406
- Ligands: ZN.20
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.260, C:D.260, C:D.271, C:E.406, H2O.17
ZN.20: 6 residues within 4Å:- Chain C: D.271, H.354, T.381, E.383, E.406
- Ligands: ZN.19
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.271, C:H.354, C:E.383, C:E.406, H2O.17
ZN.23: 1 residues within 4Å:- Chain C: H.71
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:H.71
ZN.24: 3 residues within 4Å:- Chain C: H.243, H.361
- Ligands: PRO.17
4 PLIP interactions:1 Ligand-Ligand interactions, 2 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: PRO.17, C:H.243, C:H.361, H2O.17
ZN.27: 6 residues within 4Å:- Chain D: Y.229, D.260, D.271, T.273, E.406
- Ligands: ZN.28
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.260, D:D.260, D:D.271, D:E.406, H2O.23
ZN.28: 6 residues within 4Å:- Chain D: D.271, H.354, T.381, E.383, E.406
- Ligands: ZN.27
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.271, D:H.354, D:E.383, D:E.406, H2O.23
ZN.31: 1 residues within 4Å:- Chain D: H.71
1 PLIP interactions:1 interactions with chain D- Metal complexes: D:H.71
ZN.32: 3 residues within 4Å:- Chain D: H.243, H.361
- Ligands: PRO.25
3 PLIP interactions:2 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:H.243, D:H.361, H2O.23
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.5: 1 residues within 4Å:- Chain A: R.399
No protein-ligand interaction detected (PLIP)MG.13: 1 residues within 4Å:- Chain B: R.399
No protein-ligand interaction detected (PLIP)MG.21: 1 residues within 4Å:- Chain C: R.399
No protein-ligand interaction detected (PLIP)MG.29: 1 residues within 4Å:- Chain D: R.399
No protein-ligand interaction detected (PLIP)- 4 x FLC: CITRATE ANION(Non-covalent)
FLC.6: 4 residues within 4Å:- Chain A: R.186, M.193, R.221, H.222
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.221, A:R.221
- Salt bridges: A:R.186, A:R.186, A:H.222, A:H.222
FLC.14: 4 residues within 4Å:- Chain B: R.186, M.193, R.221, H.222
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:R.221, B:R.221
- Salt bridges: B:R.186, B:R.186, B:H.222, B:H.222
FLC.22: 4 residues within 4Å:- Chain C: R.186, M.193, R.221, H.222
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:R.221, C:R.221
- Salt bridges: C:R.186, C:R.186, C:H.222, C:H.222
FLC.30: 4 residues within 4Å:- Chain D: R.186, M.193, R.221, H.222
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:R.221, D:R.221
- Salt bridges: D:R.186, D:R.186, D:H.222, D:H.222
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Graham, S.C. et al., Structural and Functional Implications of Metal Ion Selection in Aminopeptidase P, a Metalloprotease with a Dinuclear Metal Center. Biochemistry (2005)
- Release Date
- 2005-09-29
- Peptides
- XAA-PRO AMINOPEPTIDASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PRO: PROLINE(Non-covalent)
- 4 x LEU: LEUCINE(Non-covalent)
- 16 x ZN: ZINC ION(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x FLC: CITRATE ANION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Graham, S.C. et al., Structural and Functional Implications of Metal Ion Selection in Aminopeptidase P, a Metalloprotease with a Dinuclear Metal Center. Biochemistry (2005)
- Release Date
- 2005-09-29
- Peptides
- XAA-PRO AMINOPEPTIDASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A