SMTL ID : 2bhk.1

Crystal structure of human growth and differentiation factor 5 (GDF5)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

10 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.1: 2 residues within 4Å: Chain A: F.97, Y.109 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.97 IPA.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) IPA.3: 6 residues within 4Å: Chain A: P.87, T.88, R.120 Chain B: P.87, R.120 Ligands: IPA.8 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.120 Hydrophobic interactions: B:R.120 IPA.4: 3 residues within 4Å: Chain A: S.94, Y.106 Ligands: IPA.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.94, A:Y.106 IPA.5: 3 residues within 4Å: Chain A: P.40, I.93 Ligands: IPA.4 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.40, A:I.93 IPA.6: 2 residues within 4Å: Chain B: F.97, Y.109 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.97 Hydrogen bonds: B:Y.109 IPA.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) IPA.8: 6 residues within 4Å: Chain A: P.87, R.120 Chain B: P.87, T.88, R.120 Ligands: IPA.3 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:R.120 Hydrogen bonds: B:R.120 IPA.9: 3 residues within 4Å: Chain B: S.94, Y.106 Ligands: IPA.10 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.94 IPA.10: 3 residues within 4Å: Chain B: P.40, I.93 Ligands: IPA.9 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:P.40, B:I.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schreuder, H. et al., Crystal Structure of Recombinant Human Growth Differentiation Factor 5. Evidence for Interaction of the Type I and Type II Receptor Binding Sites. Biochem.Biophys.Res.Commun. (2005)

Release Date

2005-03-11

Peptides

GROWTH DIFFERENTIATION FACTOR 5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

GROWTH DIFFERENTIATION FACTOR 5

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