SMTL ID : 2bjm.1

SPE7:Anthrone Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

hetero-4-4-mer

Ligands

4 x ANF: ANTHRONE(Non-covalent)

ANF.1: 6 residues within 4Å: Chain A: W.33, Y.101 Chain B: Y.34, N.36, W.93, L.98 12 PLIP interactions: 8 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:Y.34, B:Y.34, B:Y.34, B:W.93, B:L.98 pi-Stacking: B:W.93, B:W.93, B:W.93, A:W.33, A:W.33, A:Y.101 Hydrogen bonds: A:W.33 ANF.2: 6 residues within 4Å: Chain C: W.33, Y.101 Chain D: Y.34, N.36, W.93, L.98 11 PLIP interactions: 8 interactions with chain D, 3 interactions with chain C Hydrophobic interactions: D:Y.34, D:Y.34, D:Y.34, D:W.93, D:L.98 pi-Stacking: D:W.93, D:W.93, D:W.93, C:W.33, C:W.33, C:Y.101 ANF.3: 6 residues within 4Å: Chain E: W.33, Y.101 Chain F: Y.34, N.36, W.93, L.98 11 PLIP interactions: 8 interactions with chain F, 3 interactions with chain E Hydrophobic interactions: F:Y.34, F:Y.34, F:Y.34, F:W.93, F:L.98 pi-Stacking: F:W.93, F:W.93, F:W.93, E:W.33, E:W.33, E:Y.101 ANF.4: 6 residues within 4Å: Chain G: W.33, Y.101 Chain H: Y.34, N.36, W.93, L.98 11 PLIP interactions: 3 interactions with chain G, 8 interactions with chain H pi-Stacking: G:W.33, G:W.33, G:Y.101, H:W.93, H:W.93, H:W.93 Hydrophobic interactions: H:Y.34, H:Y.34, H:Y.34, H:W.93, H:L.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

James, L.C. et al., Structure and Kinetics of a Transient Antibody Binding Intermediate Reveal a Kinetic Discrimination Mechanism in Antigen Recognition. Proc.Natl.Acad.Sci.USA (2005)

Release Date

2005-08-18

Peptides

IGE SPE7 HEAVY CHAIN: ACEG
IGE SPE7 LIGHT CHAIN: BDFH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

C
H

E
H

G
H

B
L

D
L

F
L

H
L

IGE SPE7 HEAVY CHAIN

IGE SPE7 LIGHT CHAIN