SMTL ID : 2bjn.1

X-RAY STRUCTURE OF HUMAN TPC6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.33, K.37, N.40, M.41, R.44 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain A Water bridges: B:K.22, B:K.22 Hydrogen bonds: A:T.36, A:N.40 Salt bridges: A:R.33, A:R.44 SO4.2: 10 residues within 4Å: Chain A: Y.21, E.28, V.29, E.30, N.31, G.32, R.33, C.34, I.35 Ligands: GOL.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.21, A:G.32, A:C.34, A:I.35 SO4.5: 4 residues within 4Å: Chain B: G.92, I.140, M.156, I.157 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:I.157 SO4.6: 4 residues within 4Å: Chain A: G.1 Chain B: F.53, T.54, R.59 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:G.1, B:T.54, B:T.54 Water bridges: A:M.3 Salt bridges: B:R.59 SO4.7: 5 residues within 4Å: Chain B: R.33, K.37, N.40, M.41, R.44 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.40 Water bridges: B:R.33 Salt bridges: B:R.33, B:R.44

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: I.35, E.39, S.118, A.122, T.142, A.143 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.39, A:S.118, A:A.143, A:A.143 GOL.4: 5 residues within 4Å: Chain A: Y.21, V.29, I.35, E.115 Ligands: SO4.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.21, A:V.29, A:K.119, A:K.119 GOL.8: 5 residues within 4Å: Chain B: K.68, C.71, K.72, Q.82, I.83 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:I.83 Water bridges: B:L.86 GOL.9: 8 residues within 4Å: Chain B: I.35, E.39, S.118, L.121, A.122, C.125, T.142, A.143 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.39, B:A.143

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kummel, D. et al., The Structure of the Trapp Subunit Tpc6 Suggests a Model for a Trapp Subcomplex. Embo Rep. (2005)

Release Date

2005-07-20

Peptides

TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 6B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 6B