SMTL ID : 2bka.1

CC3(TIP30)Crystal Structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 27 residues within 4Å: Chain A: G.25, S.27, G.28, E.29, T.30, R.52, R.53, F.72, C.91, L.92, G.93, T.94, V.107, Y.111, L.130, S.131, S.132, Y.143, K.147, P.167, G.168, V.169, L.170 Chain B: R.178, P.179, G.180, L.183 37 PLIP interactions: 30 interactions with chain A, 7 interactions with chain B Hydrophobic interactions: A:P.167, A:L.170, B:L.183 Hydrogen bonds: A:G.25, A:S.27, A:S.27, A:S.27, A:G.28, A:E.29, A:T.30, A:T.30, A:L.92, A:G.93, A:K.147, A:L.170, B:R.178, B:R.178, B:G.180 Water bridges: A:A.26, A:E.29, A:E.29, A:G.31, A:R.52, A:R.52, A:R.52, A:L.92, A:T.94, A:K.98, A:Y.111, A:K.147, B:E.181 Salt bridges: A:R.52, A:R.53, A:K.98, B:R.178, B:R.178 pi-Cation interactions: A:R.52 NDP.7: 27 residues within 4Å: Chain A: R.178, P.179, G.180, L.183 Chain B: G.25, S.27, G.28, E.29, T.30, R.52, R.53, F.72, C.91, L.92, G.93, T.94, V.107, Y.111, L.130, S.131, S.132, Y.143, K.147, P.167, G.168, V.169, L.170 37 PLIP interactions: 30 interactions with chain B, 7 interactions with chain A Hydrophobic interactions: B:P.167, B:L.170, A:L.183 Hydrogen bonds: B:G.25, B:S.27, B:S.27, B:S.27, B:G.28, B:E.29, B:T.30, B:T.30, B:L.92, B:G.93, B:Y.143, B:K.147, B:L.170, A:R.178, A:R.178, A:G.180 Water bridges: B:A.26, B:E.29, B:G.31, B:R.52, B:R.52, B:L.92, B:T.94, B:K.98, B:Y.111, B:Y.111, B:K.147, A:E.181 Salt bridges: B:R.52, B:R.53, B:K.98, A:R.178, A:R.178 pi-Cation interactions: B:R.52

2 x PE8: 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL(Non-covalent)

PE8.2: 15 residues within 4Å: Chain A: V.169, Q.175, L.183, V.184, K.186, F.187 Chain B: L.171, Q.175, E.181, V.184, F.188, W.195, A.196, S.200 Ligands: PE8.8 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Q.175, B:Q.175 PE8.8: 15 residues within 4Å: Chain A: L.171, Q.175, E.181, V.184, F.188, W.195, A.196, S.200 Chain B: V.169, Q.175, L.183, V.184, K.186, F.187 Ligands: PE8.2 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Q.175, B:Q.175

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: F.72, E.73, L.75, D.76, R.106, Y.111, K.114 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.73, A:D.76, A:R.106, A:R.106 Water bridges: A:D.76, A:K.114 GOL.4: 3 residues within 4Å: Chain A: K.220, Q.221, M.222 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.222, A:M.222 GOL.9: 7 residues within 4Å: Chain B: F.72, E.73, L.75, D.76, R.106, Y.111, K.114 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:E.73, B:R.106, B:R.106 Water bridges: B:D.76, B:K.114 GOL.10: 3 residues within 4Å: Chain B: K.220, Q.221, M.222 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:M.222, B:M.222

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 3 residues within 4Å: Chain A: R.96, G.100, A.101 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.101 Water bridges: A:E.102 Salt bridges: A:R.96 SO4.6: 5 residues within 4Å: Chain A: R.96, F.141 Chain B: W.182, R.185, K.186 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain A Water bridges: B:R.185, B:R.185, B:R.185, A:R.96 Salt bridges: B:R.185, B:K.186, A:R.96 SO4.11: 3 residues within 4Å: Chain B: R.96, G.100, A.101 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.101 Water bridges: B:E.102 Salt bridges: B:R.96 SO4.12: 5 residues within 4Å: Chain A: W.182, R.185, K.186 Chain B: R.96, F.141 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Water bridges: A:R.185, A:R.185, A:R.185, B:R.96 Salt bridges: A:R.185, A:K.186, B:R.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

El Omari, K. et al., Crystal Structure of Cc3 (Tip30): Implications for its Role as a Tumor Suppressor. J.Biol.Chem. (2005)

Release Date

2005-02-21

Peptides

TAT-INTERACTING PROTEIN TIP30: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

TAT-INTERACTING PROTEIN TIP30