SMTL ID : 2bkl.1 (1 other biounit)

Structural and Mechanistic Analysis of Two Prolyl Endopeptidases: Role of Inter-Domain Dynamics in Catalysis and Specificity

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x ZAH: N-[(BENZYLOXY)CARBONYL]-L-ALANYL-L-PROLINE(Covalent)

ZAH.1: 14 residues within 4Å: Chain A: D.145, K.169, Y.170, W.249, Y.453, F.456, S.533, N.534, L.559, W.574, Y.578, R.618, V.619, H.651 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.249, A:F.456, A:L.559, A:W.574, A:W.574, A:V.619 Hydrogen bonds: A:N.534, A:R.618 pi-Stacking: A:Y.170

2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.2: 8 residues within 4Å: Chain A: Q.19, V.20, A.21, H.591, H.597, V.599, R.600, P.601 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.21 Salt bridges: A:H.591 MES.3: 8 residues within 4Å: Chain A: Y.183, Y.206, T.217, V.219, L.241, K.257, P.259, G.260 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.183, A:G.260 Water bridges: A:K.257, A:K.257 Salt bridges: A:K.257

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: T.176, P.177, D.178 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.178 Water bridges: A:K.239

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shan, L. et al., Structural and Mechanistic Analysis of Two Prolyl Endopeptidases: Role of Interdomain Dynamics in Catalysis and Specificity. Proc.Natl.Acad.Sci.USA (2005)

Release Date

2005-03-09

Peptides

PROLYL ENDOPEPTIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROLYL ENDOPEPTIDASE

Related Entries With Identical Sequence