SMTL ID : 2bkw.1

Yeast alanine:glyoxylate aminotransferase YFL030w

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.57 Å

Oligo State

homo-dimer

Ligands

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.1: 18 residues within 4Å: Chain A: S.67, G.68, T.69, W.72, F.97, T.144, V.146, T.148, D.175, V.177, C.178, A.198, Q.200, K.201 Chain B: Y.255, A.257, T.258 Ligands: GLV.2 14 PLIP interactions: 11 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:T.144, A:V.177, A:K.201 Hydrogen bonds: A:G.68, A:T.69, A:T.69, A:T.148, A:T.148, A:Q.200, B:Y.255, B:T.258, B:T.258 Salt bridges: A:K.201 pi-Stacking: A:F.97 PLP.3: 18 residues within 4Å: Chain A: Y.255, A.257, T.258 Chain B: S.67, G.68, T.69, W.72, F.97, T.144, V.146, T.148, D.175, V.177, C.178, A.198, Q.200, K.201 Ligands: GLV.4 12 PLIP interactions: 9 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:T.144, B:V.177, B:K.201 Hydrogen bonds: B:G.68, B:T.69, B:T.148, B:Q.200, A:T.258, A:T.258, A:T.258 Salt bridges: B:K.201 pi-Stacking: B:F.97

2 x GLV: GLYOXYLIC ACID(Non-covalent)

GLV.2: 8 residues within 4Å: Chain A: P.11, F.97, T.148, I.344, R.354 Chain B: H.31, Y.255 Ligands: PLP.1 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.201, A:R.354 GLV.4: 8 residues within 4Å: Chain A: H.31, Y.255 Chain B: P.11, F.97, T.148, I.344, R.354 Ligands: PLP.3 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:K.201, B:R.354

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meyer, P. et al., Crystal Structure and Confirmation of the Alanine:Glyoxylate Aminotransferase Activity of the Yfl030W Yeast Protein. Biochimie (2005)

Release Date

2005-11-02

Peptides

ALANINE-GLYOXYLATE AMINOTRANSFERASE 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

ALANINE-GLYOXYLATE AMINOTRANSFERASE 1