SMTL ID : 2ble.1

Structure of human guanosine monophosphate reductase GMPR1 in complex with GMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

4 x 5GP: GUANOSINE-5'-MONOPHOSPHATE(Non-covalent)

5GP.1: 22 residues within 4Å: Chain A: A.75, M.77, N.180, G.205, S.206, V.207, C.208, D.241, G.242, G.243, M.262, L.263, G.264, G.265, G.290, M.291, S.292, S.293, R.308, A.309, S.310, G.312 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:N.180, A:S.206, A:D.241, A:G.243, A:G.264, A:G.265, A:M.291, A:S.292, A:R.308, A:A.309, A:S.310, A:S.310, A:S.310, A:G.312 Water bridges: A:V.207, A:C.208, A:C.244, A:C.244, A:C.244, A:M.266 5GP.4: 22 residues within 4Å: Chain B: A.75, M.77, N.180, G.205, S.206, V.207, C.208, D.241, G.242, G.243, M.262, L.263, G.264, G.265, G.290, M.291, S.292, S.293, R.308, A.309, S.310, G.312 20 PLIP interactions: 20 interactions with chain B Hydrogen bonds: B:N.180, B:S.206, B:D.241, B:G.243, B:G.264, B:G.265, B:M.291, B:S.292, B:R.308, B:A.309, B:S.310, B:S.310, B:S.310, B:G.312 Water bridges: B:V.207, B:C.208, B:C.244, B:C.244, B:C.244, B:M.266 5GP.7: 22 residues within 4Å: Chain C: A.75, M.77, N.180, G.205, S.206, V.207, C.208, D.241, G.242, G.243, M.262, L.263, G.264, G.265, G.290, M.291, S.292, S.293, R.308, A.309, S.310, G.312 20 PLIP interactions: 20 interactions with chain C Hydrogen bonds: C:N.180, C:S.206, C:D.241, C:G.243, C:G.264, C:G.265, C:M.291, C:S.292, C:R.308, C:A.309, C:S.310, C:S.310, C:S.310, C:G.312 Water bridges: C:V.207, C:C.208, C:C.244, C:C.244, C:C.244, C:M.266 5GP.10: 22 residues within 4Å: Chain D: A.75, M.77, N.180, G.205, S.206, V.207, C.208, D.241, G.242, G.243, M.262, L.263, G.264, G.265, G.290, M.291, S.292, S.293, R.308, A.309, S.310, G.312 20 PLIP interactions: 20 interactions with chain D Hydrogen bonds: D:N.180, D:S.206, D:D.241, D:G.243, D:G.264, D:G.265, D:M.291, D:S.292, D:R.308, D:A.309, D:S.310, D:S.310, D:S.310, D:G.312 Water bridges: D:V.207, D:C.208, D:C.244, D:C.244, D:C.244, D:M.266

8 x NA: SODIUM ION(Non-functional Binders)

NA.2: 5 residues within 4Å: Chain A: T.79, S.268, G.269, C.273, F.288 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.79, A:T.79, A:G.269 NA.3: 1 residues within 4Å: Chain A: S.127 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.127 NA.5: 5 residues within 4Å: Chain B: T.79, S.268, G.269, C.273, F.288 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.79, B:T.79, B:G.269 NA.6: 1 residues within 4Å: Chain B: S.127 No protein-ligand interaction detected (PLIP) NA.8: 5 residues within 4Å: Chain C: T.79, S.268, G.269, C.273, F.288 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:T.79, C:G.269 Water bridges: C:L.287 NA.9: 1 residues within 4Å: Chain C: S.127 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.127 NA.11: 5 residues within 4Å: Chain D: T.79, S.268, G.269, C.273, F.288 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:T.79, D:G.269 Water bridges: D:L.287 NA.12: 1 residues within 4Å: Chain D: S.127 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:S.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bunkoczi, G. et al., Structure of Human Guanosine Monophosphate Reductase Gmpr1 in Complex with Gmp. To be Published

Release Date

2005-03-09

Peptides

GMP REDUCTASE I: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

GMP REDUCTASE I

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