SMTL ID : 2bln.1 (1 other biounit)

N-terminal formyltransferase domain of ArnA in complex with N-5- formyltetrahydrofolate and UMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

1 x FON: N-{[4-({[(6R)-2-amino-5-formyl-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)phenyl]carbonyl}-L-glutamic acid(Non-covalent)

FON.1: 13 residues within 4Å: Chain A: S.81, Y.84, R.85, H.86, L.87, I.88, L.93, N.102, R.114, M.135, V.136, A.139, D.140 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.87, A:A.139 Hydrogen bonds: A:H.86, A:I.88, A:I.88, A:I.88, A:N.102, A:D.140, A:D.140 Water bridges: A:L.103, A:H.104, A:R.114, A:R.114, A:V.136, A:A.141 Salt bridges: A:R.114 pi-Cation interactions: A:R.114

1 x U5P: URIDINE-5'-MONOPHOSPHATE(Non-covalent)

U5P.2: 11 residues within 4Å: Chain A: H.9, Y.42, R.85, N.118, R.200, R.201, T.202, P.203, V.224, W.228, P.229 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:R.201 Hydrogen bonds: A:R.200, A:R.201 Water bridges: A:Y.42, A:Y.42, A:R.85, A:R.201, A:T.202 Salt bridges: A:H.9, A:R.85

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 5 residues within 4Å: Chain A: M.11, Y.83, L.117, H.162, L.165 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.83, A:L.117 Hydrogen bonds: A:Y.83 Water bridges: A:L.117 Salt bridges: A:H.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Williams, G.J. et al., Structure and Function of Both Domains of Arna, a Dual Function Decarboxylase and a Formyltransferase, Involved in 4-Amino-4-Deoxy-L-Arabinose Biosynthesis. J.Biol.Chem. (2005)

Release Date

2005-04-08

Peptides

PROTEIN YFBG: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROTEIN YFBG

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