SMTL ID : 2bm2.1

human beta-II tryptase in complex with 4-(3-Aminomethyl-phenyl)- piperidin-1-yl-(5-phenethyl- pyridin-3-yl)-methanone

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

4 x PM2: 1-[3-(1-{[5-(2-PHENYLETHYL)PYRIDIN-3-YL]CARBONYL}PIPERIDIN-4-YL)PHENYL]METHANAMINE(Non-covalent)

PM2.1: 17 residues within 4Å: Chain A: Q.87, D.188, S.189, C.190, Q.191, S.194, V.212, W.214, G.215, E.216, G.217, C.218, G.225 Chain C: P.48, D.49, Y.84, T.85 10 PLIP interactions: 7 interactions with chain A, 3 interactions with chain C Hydrophobic interactions: A:Q.87, A:Q.191, A:V.212, A:E.216, C:P.48, C:Y.84, C:T.85 Hydrogen bonds: A:G.217, A:G.217 Water bridges: A:Q.87 PM2.2: 16 residues within 4Å: Chain B: Q.87, D.188, S.189, C.190, Q.191, S.194, V.212, W.214, G.215, E.216, G.217, C.218, G.225 Chain D: P.48, Y.84, T.85 9 PLIP interactions: 6 interactions with chain B, 3 interactions with chain D Hydrophobic interactions: B:V.212, B:W.214, B:E.216, D:P.48, D:Y.84, D:T.85 Hydrogen bonds: B:G.217, B:G.217 Water bridges: B:Q.87 PM2.3: 15 residues within 4Å: Chain A: P.48, Y.84 Chain C: Q.87, D.188, S.189, C.190, Q.191, S.194, V.212, W.214, G.215, E.216, G.217, C.218, G.225 7 PLIP interactions: 2 interactions with chain A, 5 interactions with chain C Hydrophobic interactions: A:P.48, A:Y.84, C:V.212, C:W.214, C:E.216 Hydrogen bonds: C:G.217, C:G.217 PM2.4: 16 residues within 4Å: Chain B: P.48, D.49, Y.84 Chain D: Q.87, D.188, S.189, C.190, Q.191, S.194, V.212, W.214, G.215, E.216, G.217, C.218, G.225 10 PLIP interactions: 8 interactions with chain D, 2 interactions with chain B Hydrophobic interactions: D:V.212, D:W.214, D:E.216, B:P.48, B:Y.84 Hydrogen bonds: D:S.189, D:G.217, D:G.217 Water bridges: D:Q.87, D:Q.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Levell, J. et al., Structure Based Design of 4-(3-Aminomethylphenyl) Piperidinyl-1-Amides: Novel, Potent, Selective, and Orally Bioavailable Inhibitors of Bii Tryptase. Bioorg.Med.Chem. (2005)

Release Date

2005-03-22

Peptides

HUMAN BETA2 TRYPTASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

HUMAN BETA2 TRYPTASE

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