SMTL ID : 2bm9.1

cmcI-N160 in complex with SAM

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.94 Å

Oligo State

homo-hexamer

Ligands

6 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 17 residues within 4Å: Chain A: L.18, L.64, K.65, E.87, G.89, V.90, Y.91, S.95, D.116, R.117, R.121, G.137, D.138, C.139, N.160, A.161, A.163 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:N.160 Hydrogen bonds: A:Y.91, A:S.95, A:S.95, A:S.95, A:R.117, A:R.117, A:R.121, A:R.121, A:D.138, A:C.139 Water bridges: A:S.95 Salt bridges: A:K.65 pi-Cation interactions: A:R.117 SAM.2: 17 residues within 4Å: Chain B: L.18, L.64, K.65, E.87, G.89, V.90, Y.91, S.95, D.116, R.117, R.121, G.137, D.138, C.139, N.160, A.161, A.163 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:N.160 Hydrogen bonds: B:E.87, B:V.90, B:Y.91, B:S.95, B:S.95, B:R.117, B:R.117, B:R.121, B:R.121, B:D.138, B:C.139 Water bridges: B:S.95 Salt bridges: B:K.65 pi-Cation interactions: B:R.117 SAM.3: 18 residues within 4Å: Chain C: L.18, L.64, K.65, E.87, G.89, V.90, Y.91, N.92, S.95, D.116, R.117, R.121, G.137, D.138, C.139, N.160, A.161, A.163 18 PLIP interactions: 18 interactions with chain C Hydrophobic interactions: C:L.64 Hydrogen bonds: C:K.65, C:V.90, C:Y.91, C:N.92, C:S.95, C:S.95, C:S.95, C:R.117, C:R.117, C:R.117, C:R.121, C:R.121, C:D.138, C:D.138, C:C.139 Salt bridges: C:K.65 pi-Cation interactions: C:R.117 SAM.4: 17 residues within 4Å: Chain D: L.18, L.64, K.65, E.87, G.89, V.90, Y.91, S.95, D.116, R.117, R.121, G.137, D.138, C.139, N.160, A.161, A.163 15 PLIP interactions: 15 interactions with chain D Hydrophobic interactions: D:N.160 Hydrogen bonds: D:K.65, D:G.89, D:V.90, D:V.90, D:Y.91, D:R.117, D:R.121, D:R.121, D:D.138, D:D.138, D:C.139, D:N.160 Salt bridges: D:K.65 pi-Cation interactions: D:R.117 SAM.5: 17 residues within 4Å: Chain E: L.18, L.64, K.65, E.87, G.89, V.90, Y.91, S.95, D.116, R.117, R.121, G.137, D.138, C.139, N.160, A.161, A.163 14 PLIP interactions: 14 interactions with chain E Hydrophobic interactions: E:L.64, E:N.160 Hydrogen bonds: E:E.87, E:V.90, E:V.90, E:Y.91, E:S.95, E:R.117, E:R.117, E:R.121, E:D.138, E:C.139 Salt bridges: E:K.65 pi-Cation interactions: E:R.117 SAM.6: 15 residues within 4Å: Chain F: G.17, L.18, L.64, G.89, D.116, R.117, R.121, G.137, D.138, C.139, N.160, A.161, H.162, A.163, D.187 9 PLIP interactions: 9 interactions with chain F Hydrogen bonds: F:Y.91, F:R.117, F:R.117, F:R.121, F:D.138, F:C.139, F:N.160, F:N.160 pi-Cation interactions: F:R.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oster, L.M. et al., Insights Into Cephamycin Biosynthesis: The Crystal Structure of Cmci from Streptomyces Clavuligerus. J.Mol.Biol. (2006)

Release Date

2006-03-09

Peptides

CEPHALOSPORIN HYDROXYLASE CMCI: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

CEPHALOSPORIN HYDROXYLASE CMCI

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