SMTL ID : 2bmi.1

METALLO-BETA-LACTAMASE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.82, H.84, D.86, H.145 Ligands: ZN.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.82, A:H.84, A:H.145, H2O.1 ZN.2: 5 residues within 4Å: Chain A: D.86, H.145, C.164, H.206 Ligands: ZN.1 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.86, A:C.164, A:H.206, H2O.1, H2O.9 ZN.4: 4 residues within 4Å: Chain B: H.82, H.84, H.145 Ligands: ZN.5 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.82, B:H.84, B:H.145, H2O.9 ZN.5: 4 residues within 4Å: Chain B: D.86, C.164, H.206 Ligands: ZN.4 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.86, B:C.164, B:H.206, H2O.9, H2O.17

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 3 residues within 4Å: Chain A: N.38, D.52, D.86 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.38, A:D.52 NA.6: 3 residues within 4Å: Chain B: N.38, D.52, D.86 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.52, B:D.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carfi, A. et al., X-ray structure of the ZnII beta-lactamase from Bacteroides fragilis in an orthorhombic crystal form. Acta Crystallogr.,Sect.D (1998)

Release Date

1998-09-23

Peptides

PROTEIN (CLASS B BETA-LACTAMASE): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PROTEIN (CLASS B BETA-LACTAMASE)

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