- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)
- 15 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 3 residues within 4Å:- Chain A: Q.39, K.42
- Ligands: GOL.3
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.39, A:K.42
GOL.3: 4 residues within 4Å:- Chain A: Q.39, E.43, E.46
- Ligands: GOL.2
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.39
GOL.4: 6 residues within 4Å:- Chain A: G.58, L.60, F.61, R.62, G.65, L.66
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:G.58, A:L.60, A:R.62, A:G.65
GOL.5: 6 residues within 4Å:- Chain A: H.78, I.108, G.139, N.140
- Chain B: A.112
- Chain D: Y.117
4 PLIP interactions:2 interactions with chain D, 2 interactions with chain A- Hydrogen bonds: D:Y.117, A:N.140
- Water bridges: D:W.119, A:T.138
GOL.8: 4 residues within 4Å:- Chain B: H.96, V.100, N.101
- Chain D: R.127
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain D- Hydrogen bonds: B:V.100, B:N.101, D:R.127, D:R.127
- Water bridges: B:A.102
GOL.10: 3 residues within 4Å:- Chain C: Q.39, K.42
- Ligands: GOL.11
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:Q.39, C:K.42
GOL.11: 4 residues within 4Å:- Chain C: Q.39, E.43, E.46
- Ligands: GOL.10
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:Q.39
GOL.12: 6 residues within 4Å:- Chain C: G.58, L.60, F.61, R.62, G.65, L.66
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:G.58, C:L.60, C:R.62, C:G.65
GOL.13: 6 residues within 4Å:- Chain C: H.78, I.108, G.139, N.140
- Chain D: A.112
- Chain F: Y.117
4 PLIP interactions:2 interactions with chain F, 2 interactions with chain C- Hydrogen bonds: F:Y.117, C:N.140
- Water bridges: F:W.119, C:T.138
GOL.16: 4 residues within 4Å:- Chain D: H.96, V.100, N.101
- Chain F: R.127
5 PLIP interactions:3 interactions with chain D, 2 interactions with chain F- Hydrogen bonds: D:V.100, D:N.101, F:R.127, F:R.127
- Water bridges: D:A.102
GOL.18: 3 residues within 4Å:- Chain E: Q.39, K.42
- Ligands: GOL.19
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:Q.39, E:K.42
GOL.19: 4 residues within 4Å:- Chain E: Q.39, E.43, E.46
- Ligands: GOL.18
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:Q.39
GOL.20: 6 residues within 4Å:- Chain E: G.58, L.60, F.61, R.62, G.65, L.66
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:G.58, E:L.60, E:R.62, E:G.65
GOL.21: 6 residues within 4Å:- Chain B: Y.117
- Chain E: H.78, I.108, G.139, N.140
- Chain F: A.112
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain E- Hydrogen bonds: B:Y.117, E:N.140
- Water bridges: B:W.119, E:T.138
GOL.24: 4 residues within 4Å:- Chain B: R.127
- Chain F: H.96, V.100, N.101
5 PLIP interactions:3 interactions with chain F, 2 interactions with chain B- Hydrogen bonds: F:V.100, F:N.101, B:R.127, B:R.127
- Water bridges: F:A.102
- 3 x POP: PYROPHOSPHATE 2-(Non-covalent)
POP.6: 6 residues within 4Å:- Chain A: N.101, R.103, R.130
- Chain E: S.124, R.127, N.128
9 PLIP interactions:4 interactions with chain E, 5 interactions with chain A- Hydrogen bonds: E:S.124, E:S.124, E:N.128
- Salt bridges: E:R.127, A:R.103, A:R.130, A:R.130
- Water bridges: A:R.130, A:R.130
POP.14: 6 residues within 4Å:- Chain A: S.124, R.127, N.128
- Chain C: N.101, R.103, R.130
9 PLIP interactions:4 interactions with chain A, 5 interactions with chain C- Hydrogen bonds: A:S.124, A:S.124, A:N.128
- Salt bridges: A:R.127, C:R.103, C:R.130, C:R.130
- Water bridges: C:R.130, C:R.130
POP.22: 6 residues within 4Å:- Chain C: S.124, R.127, N.128
- Chain E: N.101, R.103, R.130
9 PLIP interactions:4 interactions with chain C, 5 interactions with chain E- Hydrogen bonds: C:S.124, C:S.124, C:N.128
- Salt bridges: C:R.127, E:R.103, E:R.130, E:R.130
- Water bridges: E:R.130, E:R.130
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Briozzo, P. et al., Structure of Escherichia Coli Ump Kinase Differs from that of Other Nucleoside Monophosphate Kinases and Sheds New Light on Enzyme Regulation. J.Biol.Chem. (2005)
- Release Date
- 2005-04-27
- Peptides
- URIDYLATE KINASE: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)
- 15 x GOL: GLYCEROL(Non-functional Binders)
- 3 x POP: PYROPHOSPHATE 2-(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Briozzo, P. et al., Structure of Escherichia Coli Ump Kinase Differs from that of Other Nucleoside Monophosphate Kinases and Sheds New Light on Enzyme Regulation. J.Biol.Chem. (2005)
- Release Date
- 2005-04-27
- Peptides
- URIDYLATE KINASE: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B