SMTL ID : 2bpq.1

Anthranilate phosphoribosyltransferase (TrpD) from Mycobacterium tuberculosis (Apo structure)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

3 x BEN: BENZAMIDINE(Non-functional Binders)

BEN.1: 10 residues within 4Å: Chain A: M.69, T.70, M.71, K.72, P.74, D.225, L.226 Chain B: T.35, N.37 Ligands: GOL.5 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.226 Hydrogen bonds: A:T.70, A:D.225 BEN.3: 9 residues within 4Å: Chain A: N.37 Chain B: M.69, T.70, M.71, K.72, P.74, V.201, D.225, L.226 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:V.201, B:L.226 Hydrogen bonds: B:T.70, B:D.225 BEN.4: 4 residues within 4Å: Chain B: T.353, G.354, A.355, Q.358 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:A.355 Hydrogen bonds: B:T.353

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: L.272, F.274, D.275, G.278, F.279, W.336 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.275, A:W.336 GOL.5: 6 residues within 4Å: Chain A: T.70, P.199, F.223 Chain B: T.35, D.36 Ligands: BEN.1 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:T.70, A:P.199, B:D.36, B:D.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, C.E. et al., The Crystal Structure of Trpd, a Metabolic Enzyme Essential for Lung Colonization by Mycobacterium Tuberculosis, in Complex with its Substrate Phosphoribosylpyrophosphate. J.Mol.Biol. (2006)

Release Date

2006-01-04

Peptides

ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE