SMTL ID : 2bqy.1

INORGANIC PYROPHOSPHATASE FROM THE PATHOGENIC BACTERIUM HELICOBACTER PYLORI-KINETIC AND STRUCTURAL PROPERTIES

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-hexamer

Ligands

6 x POP: PYROPHOSPHATE 2-(Non-covalent)

POP.1: 8 residues within 4Å: Chain A: K.28, Y.54, D.69, D.96, D.101, K.103, Y.140, K.141 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:Y.54, A:D.96, A:D.96, A:D.101, A:Y.140 Water bridges: A:K.28, A:K.28, A:D.41, A:D.96, A:E.97, A:K.141, A:K.141 Salt bridges: A:K.28, A:K.28, A:K.103, A:K.141 POP.2: 8 residues within 4Å: Chain B: K.28, Y.54, D.69, D.96, D.101, K.103, Y.140, K.141 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:Y.54, B:D.96, B:D.96, B:D.101, B:Y.140 Water bridges: B:K.28, B:K.28, B:D.41, B:D.96, B:E.97, B:K.141, B:K.141 Salt bridges: B:K.28, B:K.28, B:K.103, B:K.141 POP.3: 8 residues within 4Å: Chain C: K.28, Y.54, D.69, D.96, D.101, K.103, Y.140, K.141 16 PLIP interactions: 16 interactions with chain C Hydrogen bonds: C:Y.54, C:D.96, C:D.96, C:D.101, C:Y.140 Water bridges: C:K.28, C:K.28, C:D.41, C:D.96, C:E.97, C:K.141, C:K.141 Salt bridges: C:K.28, C:K.28, C:K.103, C:K.141 POP.4: 8 residues within 4Å: Chain D: K.28, Y.54, D.69, D.96, D.101, K.103, Y.140, K.141 14 PLIP interactions: 14 interactions with chain D Hydrogen bonds: D:Y.54, D:D.96, D:D.101, D:Y.140 Water bridges: D:K.28, D:K.28, D:D.96, D:E.97, D:K.141, D:K.141 Salt bridges: D:K.28, D:K.28, D:K.103, D:K.141 POP.5: 8 residues within 4Å: Chain E: K.28, Y.54, D.69, D.96, D.101, K.103, Y.140, K.141 14 PLIP interactions: 14 interactions with chain E Hydrogen bonds: E:Y.54, E:D.96, E:D.101, E:Y.140 Water bridges: E:K.28, E:K.28, E:D.96, E:E.97, E:K.141, E:K.141 Salt bridges: E:K.28, E:K.28, E:K.103, E:K.141 POP.6: 8 residues within 4Å: Chain F: K.28, Y.54, D.69, D.96, D.101, K.103, Y.140, K.141 14 PLIP interactions: 14 interactions with chain F Hydrogen bonds: F:Y.54, F:D.96, F:D.101, F:Y.140 Water bridges: F:K.28, F:K.28, F:D.96, F:E.97, F:K.141, F:K.141 Salt bridges: F:K.28, F:K.28, F:K.103, F:K.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chao, T.-C. et al., Kinetic and Structural Properties of Inorganic Pyrophosphatase from the Pathogenic Bacterium Helicobacter Pylori. Proteins (2006)

Release Date

2006-10-18

Peptides

INORGANIC PYROPHOSPHATASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

INORGANIC PYROPHOSPHATASE

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