- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.59 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 6 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)
SAM.2: 19 residues within 4Å:- Chain A: L.18, L.64, K.65, E.87, G.89, V.90, Y.91, S.95, D.116, R.117, R.121, G.137, D.138, C.139, S.140, D.160, A.161, A.163
- Ligands: P4C.4
18 PLIP interactions:18 interactions with chain A- Hydrophobic interactions: A:D.160
- Hydrogen bonds: A:L.64, A:G.89, A:Y.91, A:S.95, A:S.95, A:R.117, A:R.121, A:R.121, A:D.138, A:C.139, A:S.140, A:D.160
- Water bridges: A:G.93, A:E.186
- Salt bridges: A:K.65, A:D.160
- pi-Cation interactions: A:R.117
SAM.6: 19 residues within 4Å:- Chain B: L.18, L.64, K.65, E.87, G.89, V.90, Y.91, N.92, S.95, D.116, R.117, R.121, G.137, D.138, C.139, D.160, A.161, A.163
- Ligands: P4C.8
16 PLIP interactions:16 interactions with chain B- Hydrogen bonds: B:L.64, B:G.89, B:Y.91, B:N.92, B:S.95, B:S.95, B:R.117, B:R.121, B:D.138, B:C.139
- Water bridges: B:G.93, B:D.116, B:R.117, B:D.118
- Salt bridges: B:K.65, B:D.160
SAM.10: 19 residues within 4Å:- Chain C: L.18, L.64, K.65, E.87, G.89, V.90, Y.91, S.95, D.116, R.117, R.121, G.137, D.138, C.139, S.140, D.160, A.161, A.163
- Ligands: P4C.8
16 PLIP interactions:16 interactions with chain C- Hydrogen bonds: C:L.64, C:K.65, C:G.89, C:Y.91, C:S.95, C:S.95, C:R.117, C:R.121, C:R.121, C:D.138, C:C.139, C:S.140, C:D.160, C:D.160
- Salt bridges: C:K.65
- pi-Cation interactions: C:R.117
SAM.12: 18 residues within 4Å:- Chain D: L.18, L.64, K.65, E.87, G.89, V.90, Y.91, S.95, D.116, R.117, R.121, G.137, D.138, C.139, D.160, A.161, A.163
- Ligands: P4C.14
13 PLIP interactions:13 interactions with chain D- Hydrophobic interactions: D:Y.91
- Hydrogen bonds: D:L.64, D:K.65, D:K.65, D:K.65, D:Y.91, D:S.95, D:R.117, D:R.121, D:R.121, D:D.138, D:C.139
- pi-Cation interactions: D:R.117
SAM.16: 18 residues within 4Å:- Chain E: L.18, L.64, K.65, E.87, G.89, V.90, Y.91, S.95, D.116, R.117, R.121, D.138, C.139, D.160, A.161, A.163
- Ligands: P4C.4, MG.15
15 PLIP interactions:15 interactions with chain E- Hydrophobic interactions: E:L.64, E:D.160
- Hydrogen bonds: E:L.64, E:G.89, E:Y.91, E:S.95, E:S.95, E:R.117, E:R.121, E:R.121, E:D.138, E:D.138, E:C.139
- Salt bridges: E:K.65
- pi-Cation interactions: E:R.117
SAM.18: 17 residues within 4Å:- Chain F: L.18, L.64, K.65, E.87, G.89, V.90, Y.91, S.95, D.116, R.117, R.121, D.138, C.139, D.160, A.161, A.163
- Ligands: MG.17
14 PLIP interactions:14 interactions with chain F- Hydrophobic interactions: F:L.64
- Hydrogen bonds: F:L.64, F:K.65, F:Y.91, F:S.95, F:S.95, F:R.117, F:R.121, F:D.138, F:C.139, F:D.160
- Water bridges: F:S.95
- Salt bridges: F:K.65
- pi-Cation interactions: F:R.117
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.3: 4 residues within 4Å:- Chain A: N.13, R.16
- Chain E: N.13, R.16
2 PLIP interactions:1 interactions with chain E, 1 interactions with chain A- Hydrogen bonds: E:N.13, A:N.13
PEG.7: 5 residues within 4Å:- Chain B: N.13, R.16
- Chain C: N.13, R.16
- Ligands: P4C.8
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:R.16, C:N.13
PEG.13: 4 residues within 4Å:- Chain D: N.13, R.16
- Chain F: N.13, R.16
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain F- Hydrogen bonds: D:N.13, F:N.13
- 3 x P4C: O-ACETALDEHYDYL-HEXAETHYLENE GLYCOL(Non-covalent)
P4C.4: 16 residues within 4Å:- Chain A: R.16, G.17, L.18, H.162, Y.191, Y.195
- Chain E: R.16, G.17, L.18, M.188, Y.191, Y.195
- Ligands: MG.1, SAM.2, MG.15, SAM.16
5 PLIP interactions:2 interactions with chain E, 3 interactions with chain A- Hydrogen bonds: E:R.16, E:R.16, A:R.16, A:H.162, A:Y.195
P4C.8: 17 residues within 4Å:- Chain B: R.16, G.17, L.18, H.162, M.188, Y.191, Y.195
- Chain C: R.16, G.17, L.18, M.188, Y.191, Y.195
- Ligands: MG.5, SAM.6, PEG.7, SAM.10
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain C- Hydrogen bonds: B:R.16, B:R.16, B:Y.195, C:R.16, C:Y.195
P4C.14: 13 residues within 4Å:- Chain D: R.16, H.162, M.188, Y.191, Y.195
- Chain F: R.16, G.17, H.162, M.188, Y.191, Y.195
- Ligands: SAM.12, MG.17
1 PLIP interactions:1 interactions with chain F- Hydrogen bonds: F:R.16
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Oster, L.M. et al., Insights Into Cephamycin Biosynthesis: The Crystal Structure of Cmci from Streptomyces Clavuligerus. J.Mol.Biol. (2006)
- Release Date
- 2006-03-15
- Peptides
- CEPHALOSPORIN HYDROXYLASE CMCI: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.59 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 6 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 3 x P4C: O-ACETALDEHYDYL-HEXAETHYLENE GLYCOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Oster, L.M. et al., Insights Into Cephamycin Biosynthesis: The Crystal Structure of Cmci from Streptomyces Clavuligerus. J.Mol.Biol. (2006)
- Release Date
- 2006-03-15
- Peptides
- CEPHALOSPORIN HYDROXYLASE CMCI: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F