- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.78 Å
- Oligo State
- hetero-2-2-2-mer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)
- 2 x FUM: FUMARIC ACID(Non-covalent)
FUM.2: 10 residues within 4Å:- Chain A: G.49, F.141, H.257, L.267, T.269, E.270, R.301, H.369, R.404
- Ligands: FAD.1
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:F.141, A:L.267
- Hydrogen bonds: A:E.270
- Water bridges: A:G.49
- Salt bridges: A:H.257, A:H.257, A:R.301, A:H.369, A:R.404
FUM.11: 10 residues within 4Å:- Chain D: G.49, F.141, H.257, L.267, T.269, E.270, R.301, H.369, R.404
- Ligands: FAD.10
9 PLIP interactions:9 interactions with chain D- Hydrophobic interactions: D:F.141, D:L.267
- Hydrogen bonds: D:E.270
- Water bridges: D:G.49
- Salt bridges: D:H.257, D:H.257, D:R.301, D:H.369, D:R.404
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
FES.4: 10 residues within 4Å:- Chain B: F.55, V.56, C.57, R.58, G.60, I.61, C.62, G.63, C.65, C.77
4 PLIP interactions:4 interactions with chain B,- Metal complexes: B:C.57, B:C.62, B:C.65, B:C.77
FES.13: 10 residues within 4Å:- Chain E: F.55, V.56, C.57, R.58, G.60, I.61, C.62, G.63, C.65, C.77
4 PLIP interactions:4 interactions with chain E,- Metal complexes: E:C.57, E:C.62, E:C.65, E:C.77
- 2 x F3S: FE3-S4 CLUSTER(Non-covalent)
F3S.5: 11 residues within 4Å:- Chain B: C.161, T.163, F.170, A.173, C.208, M.209, T.210, L.211, L.212, A.213, C.214
3 PLIP interactions:3 interactions with chain B,- Metal complexes: B:C.161, B:C.208, B:C.214
F3S.14: 11 residues within 4Å:- Chain E: C.161, T.163, F.170, A.173, C.208, M.209, T.210, L.211, L.212, A.213, C.214
3 PLIP interactions:3 interactions with chain E,- Metal complexes: E:C.161, E:C.208, E:C.214
- 2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
SF4.6: 12 residues within 4Å:- Chain B: F.111, C.151, I.152, E.153, C.154, G.155, C.156, C.157, C.218, P.219, K.220, L.222
4 PLIP interactions:4 interactions with chain B,- Metal complexes: B:C.151, B:C.154, B:C.157, B:C.218
SF4.15: 12 residues within 4Å:- Chain E: F.111, C.151, I.152, E.153, C.154, G.155, C.156, C.157, C.218, P.219, K.220, L.222
4 PLIP interactions:4 interactions with chain E,- Metal complexes: E:C.151, E:C.154, E:C.157, E:C.218
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.7: 24 residues within 4Å:- Chain C: Q.30, S.31, G.34, L.37, G.38, M.41, F.90, H.93, A.94, A.97, K.100, F.101, W.126, Q.129, G.133, M.136, F.137, V.179, H.182, G.186, L.187, L.190, K.193
- Ligands: HEM.8
23 PLIP interactions:23 interactions with chain C,- Hydrophobic interactions: C:L.37, C:L.37, C:F.90, C:F.90, C:A.94, C:A.97, C:F.101, C:F.101, C:M.136, C:F.137, C:F.137, C:V.179, C:L.190
- Hydrogen bonds: C:Q.30, C:W.126
- Water bridges: C:K.193, C:K.193, C:K.193
- Salt bridges: C:K.100, C:K.193, C:K.193
- Metal complexes: C:H.93, C:H.182
HEM.8: 21 residues within 4Å:- Chain C: F.40, M.41, H.44, M.45, V.48, V.79, L.82, A.83, V.86, H.143, M.147, I.154, S.159, R.162, Y.172, L.175, L.176, V.179, G.224, F.228
- Ligands: HEM.7
23 PLIP interactions:23 interactions with chain C,- Hydrophobic interactions: C:F.40, C:F.40, C:V.48, C:V.79, C:L.82, C:V.86, C:I.154, C:Y.172, C:Y.172, C:L.175, C:L.175, C:L.175, C:V.179
- Hydrogen bonds: C:Y.172, C:Y.172, C:F.228
- Salt bridges: C:R.162
- pi-Stacking: C:H.44, C:H.143, C:H.143
- pi-Cation interactions: C:H.143
- Metal complexes: C:H.44, C:H.143
HEM.16: 24 residues within 4Å:- Chain F: Q.30, S.31, G.34, L.37, G.38, M.41, F.90, H.93, A.94, A.97, K.100, F.101, W.126, Q.129, G.133, M.136, F.137, V.179, H.182, G.186, L.187, L.190, K.193
- Ligands: HEM.17
23 PLIP interactions:23 interactions with chain F,- Hydrophobic interactions: F:L.37, F:L.37, F:F.90, F:F.90, F:A.94, F:A.97, F:F.101, F:F.101, F:M.136, F:F.137, F:V.179, F:L.190
- Hydrogen bonds: F:Q.30, F:W.126
- Water bridges: F:K.193, F:K.193, F:K.193, F:K.193
- Salt bridges: F:K.100, F:K.193, F:K.193
- Metal complexes: F:H.93, F:H.182
HEM.17: 22 residues within 4Å:- Chain F: F.40, M.41, H.44, M.45, V.48, V.79, L.82, A.83, V.86, H.143, M.147, I.154, S.159, R.162, Y.172, L.175, L.176, V.179, G.224, T.227, F.228
- Ligands: HEM.16
22 PLIP interactions:22 interactions with chain F,- Hydrophobic interactions: F:F.40, F:F.40, F:V.48, F:V.79, F:L.82, F:V.86, F:I.154, F:Y.172, F:Y.172, F:L.175, F:L.175, F:L.175, F:V.179
- Hydrogen bonds: F:Y.172, F:Y.172, F:F.228
- Salt bridges: F:R.162
- pi-Stacking: F:H.44, F:H.143
- pi-Cation interactions: F:H.143
- Metal complexes: F:H.44, F:H.143
- 2 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
LMT.9: 11 residues within 4Å:- Chain C: F.101, P.102, N.104, Y.105, Y.108, M.131
- Chain F: M.22, L.26, F.95, M.98, R.99
6 PLIP interactions:4 interactions with chain C, 2 interactions with chain F- Hydrophobic interactions: C:F.101, C:Y.108, C:Y.108, C:M.131, F:F.95, F:R.99
LMT.18: 12 residues within 4Å:- Chain C: M.22, L.26, F.95, M.98, R.99
- Chain F: F.101, P.102, I.103, N.104, Y.105, Y.108, M.131
6 PLIP interactions:2 interactions with chain C, 4 interactions with chain F- Hydrophobic interactions: C:F.95, C:R.99, F:F.101, F:Y.108, F:Y.108, F:M.131
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Madej, M.G. et al., Evidence for Transmembrane Proton Transfer in a Dihaem-Containing Membrane Protein Complex. Embo J. (2006)
- Release Date
- 2006-10-25
- Peptides
- QUINOL-FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT A: AD
QUINOL-FUMARATE REDUCTASE IRON-SULFUR SUBUNIT B: BE
QUINOL-FUMARATE REDUCTASE DIHEME CYTOCHROME B SUBUNIT C: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
DB
BE
EC
CF
F - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.78 Å
- Oligo State
- hetero-2-2-2-mer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)
- 2 x FUM: FUMARIC ACID(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 2 x F3S: FE3-S4 CLUSTER(Non-covalent)
- 2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Madej, M.G. et al., Evidence for Transmembrane Proton Transfer in a Dihaem-Containing Membrane Protein Complex. Embo J. (2006)
- Release Date
- 2006-10-25
- Peptides
- QUINOL-FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT A: AD
QUINOL-FUMARATE REDUCTASE IRON-SULFUR SUBUNIT B: BE
QUINOL-FUMARATE REDUCTASE DIHEME CYTOCHROME B SUBUNIT C: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
DB
BE
EC
CF
F - Membrane
-
We predict this structure to be a membrane protein.