SMTL ID : 2bsf.1

Structure of the C-terminal receptor-binding domain of avian reovirus fibre sigmaC, Zn crystal form.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-trimer

Ligands

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.132, D.133, S.134, R.166 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.134 Water bridges: A:D.133, A:D.133, A:N.164, A:R.166, A:R.166, A:R.166 Salt bridges: A:R.166 SO4.2: 3 residues within 4Å: Chain A: R.75, A.111, R.112 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.75, A:T.176 Salt bridges: A:R.75, A:R.112 SO4.3: 2 residues within 4Å: Chain A: S.147, S.148 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.148, A:S.148 Water bridges: A:S.147, A:R.149 SO4.5: 4 residues within 4Å: Chain B: R.132, D.133, S.134, R.166 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:S.134 Water bridges: B:D.133, B:D.133, B:N.164, B:R.166, B:R.166, B:R.166 Salt bridges: B:R.166 SO4.6: 3 residues within 4Å: Chain B: R.75, A.111, R.112 4 PLIP interactions: 4 interactions with chain B Water bridges: B:R.75, B:T.176 Salt bridges: B:R.75, B:R.112 SO4.7: 2 residues within 4Å: Chain B: S.147, S.148 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.148, B:S.148 Water bridges: B:S.147, B:R.149 SO4.9: 4 residues within 4Å: Chain C: R.132, D.133, S.134, R.166 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:S.134 Water bridges: C:D.133, C:D.133, C:N.164, C:R.166, C:R.166, C:R.166 Salt bridges: C:R.166 SO4.10: 3 residues within 4Å: Chain C: R.75, A.111, R.112 4 PLIP interactions: 4 interactions with chain C Water bridges: C:R.75, C:T.176 Salt bridges: C:R.75, C:R.112 SO4.11: 2 residues within 4Å: Chain C: S.147, S.148 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:S.148, C:S.148 Water bridges: C:S.147, C:R.149

3 x ZN: ZINC ION(Non-covalent)

ZN.4: 2 residues within 4Å: Chain A: E.3, H.8 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.3, A:E.3, A:H.8, H2O.7 ZN.8: 2 residues within 4Å: Chain B: E.3, H.8 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.3, B:E.3, B:H.8, H2O.13 ZN.12: 2 residues within 4Å: Chain C: E.3, H.8 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.3, C:E.3, C:H.8, H2O.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guardado Calvo, P. et al., Structure of the Carboxy-Terminal Receptor-Binding Domain of Avian Reovirus Fibre Sigmac. J.Mol.Biol. (2005)

Release Date

2005-11-03

Peptides

SIGMA C CAPSID PROTEIN: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

SIGMA C CAPSID PROTEIN