SMTL ID : 2bt9.1

Lectin from Ralstonia solanacearum complexed with Me-fucoside

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 0.94 Å

Oligo State

homo-trimer

Ligands

6 x MFU: methyl alpha-L-fucopyranoside(Non-covalent)

MFU.1: 9 residues within 4Å: Chain A: R.17, E.28, Y.37, G.39, A.40, F.41, I.61, W.76, W.81 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.61 Hydrogen bonds: A:E.28, A:A.40, A:F.41 Water bridges: A:R.17, A:T.38 Salt bridges: A:R.17 MFU.2: 11 residues within 4Å: Chain A: W.53, R.62, E.73, C.75, G.84, A.85, Y.86 Chain B: P.14, I.16, W.31, W.36 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:W.53, B:I.16 Hydrogen bonds: A:E.73, A:A.85, A:Y.86 Water bridges: A:K.83 Salt bridges: A:R.62 MFU.3: 9 residues within 4Å: Chain B: R.17, E.28, Y.37, G.39, A.40, F.41, I.61, W.76, W.81 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:I.61, B:W.76 Hydrogen bonds: B:E.28, B:A.40, B:F.41 Salt bridges: B:R.17 MFU.4: 9 residues within 4Å: Chain B: R.62, E.73, G.84, A.85, Y.86 Chain C: P.14, I.16, W.31, W.36 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:E.73, B:A.85, B:Y.86 Salt bridges: B:R.62 Hydrophobic interactions: C:I.16 MFU.5: 9 residues within 4Å: Chain C: R.17, E.28, Y.37, G.39, A.40, F.41, I.61, W.76, W.81 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:I.61, C:W.76 Hydrogen bonds: C:E.28, C:A.40, C:F.41 Salt bridges: C:R.17 MFU.6: 11 residues within 4Å: Chain A: P.14, I.16, W.31, W.36 Chain C: W.53, R.62, E.73, C.75, G.84, A.85, Y.86 7 PLIP interactions: 6 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:W.53, A:I.16 Hydrogen bonds: C:E.73, C:A.85, C:Y.86 Water bridges: C:K.83 Salt bridges: C:R.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kostlanova, N. et al., The fucose-binding lectin from Ralstonia solanacearum. A new type of beta-propeller architecture formed by oligomerization and interacting with fucoside, fucosyllactose, and plant xyloglucan. J. Biol. Chem. (2005)

Release Date

2005-06-02

Peptides

LECTIN: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

LECTIN

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