SMTL ID : 2bv7.1

Crystal structure of GLTP with bound GM3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.101, M.133, K.137, Y.138, Y.194 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:M.133, A:Y.138 Water bridges: A:R.101, A:R.101, A:R.101, A:E.203, A:E.203, A:N.205 Salt bridges: A:R.101, A:K.137 SO4.2: 5 residues within 4Å: Chain A: H.119, P.120, N.121, L.122, Y.156 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.121, A:L.122 Salt bridges: A:H.119

1 x GM3: N-{1-[(HEXOPYRANOSYLOXY)METHYL]-2-HYDROXYNONADECYL}TETRACOSANAMIDE(Non-covalent)

GM3.3: 23 residues within 4Å: Chain A: F.32, F.33, P.43, I.44, D.47, I.48, N.51, K.54, L.91, W.95, G.99, F.102, I.103, L.107, L.135, H.139, V.143, I.146, F.147, L.164, F.182, Y.206, V.208 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:F.32, A:F.32, A:P.43, A:I.44, A:I.48, A:I.48, A:F.102, A:F.102, A:I.103, A:L.107, A:L.135, A:L.135, A:V.143, A:I.146, A:F.147, A:F.147, A:F.147, A:L.164, A:F.182 Hydrogen bonds: A:D.47, A:D.47, A:N.51, A:N.51, A:Y.206

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Airenne, T.T. et al., Structural Evidence for Adaptive Ligand Binding of Glycolipid Transfer Protein. J.Mol.Biol. (2006)

Release Date

2005-12-14

Peptides

GLYCOLIPID TRANSFER PROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GLYCOLIPID TRANSFER PROTEIN