- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x P3S: L-METHIONINE-S-SULFOXIMINE PHOSPHATE(Non-covalent)
- 12 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.2: 20 residues within 4Å:- Chain A: Y.137, G.139, E.141, E.222, K.223, E.235, N.237, Y.238, Q.239, F.240, H.286, S.288, R.355, R.360, K.369, R.372, E.374
- Ligands: P3S.1, MG.4, MG.5
22 PLIP interactions:22 interactions with chain A- Hydrogen bonds: A:G.139, A:E.222, A:F.240, A:S.288, A:S.288, A:R.372
- Water bridges: A:A.140, A:K.223, A:K.223, A:Y.238, A:R.355, A:R.355, A:R.355
- Salt bridges: A:K.223, A:K.223, A:H.286, A:H.286, A:R.355, A:R.360
- pi-Stacking: A:F.240, A:F.240
- pi-Cation interactions: A:R.372
ADP.8: 20 residues within 4Å:- Chain B: Y.137, G.139, E.141, E.222, K.223, E.235, N.237, Y.238, Q.239, F.240, H.286, S.288, R.355, R.360, K.369, R.372, E.374
- Ligands: P3S.7, MG.10, MG.11
18 PLIP interactions:18 interactions with chain B- Hydrogen bonds: B:E.222, B:F.240, B:S.288, B:K.369, B:R.372
- Water bridges: B:A.140, B:K.223, B:Y.238, B:R.355
- Salt bridges: B:K.223, B:K.223, B:H.286, B:H.286, B:R.355, B:R.360
- pi-Stacking: B:F.240, B:F.240
- pi-Cation interactions: B:R.372
ADP.14: 20 residues within 4Å:- Chain C: Y.137, G.139, E.141, E.222, K.223, E.235, N.237, Y.238, Q.239, F.240, H.286, S.288, R.355, R.360, K.369, R.372, E.374
- Ligands: P3S.13, MG.16, MG.17
15 PLIP interactions:15 interactions with chain C- Hydrogen bonds: C:E.222, C:F.240, C:S.288, C:K.369
- Water bridges: C:A.140, C:K.223, C:Y.238, C:R.355
- Salt bridges: C:K.223, C:K.223, C:H.286, C:H.286, C:R.355, C:R.360
- pi-Cation interactions: C:R.372
ADP.20: 20 residues within 4Å:- Chain D: Y.137, G.139, E.141, E.222, K.223, E.235, N.237, Y.238, Q.239, F.240, H.286, S.288, R.355, R.360, K.369, R.372, E.374
- Ligands: P3S.19, MG.22, MG.23
21 PLIP interactions:21 interactions with chain D- Hydrogen bonds: D:G.139, D:E.222, D:F.240, D:S.288, D:K.369, D:R.372
- Water bridges: D:A.140, D:K.223, D:Y.238, D:R.355, D:R.355, D:K.371
- Salt bridges: D:K.223, D:K.223, D:H.286, D:H.286, D:R.355, D:R.360
- pi-Stacking: D:F.240, D:F.240
- pi-Cation interactions: D:R.372
ADP.26: 20 residues within 4Å:- Chain E: G.139, E.141, E.222, K.223, E.235, N.237, Y.238, Q.239, F.240, H.286, S.288, R.355, R.360, K.369, K.371, R.372, E.374
- Ligands: P3S.25, MG.28, MG.29
22 PLIP interactions:22 interactions with chain E- Hydrogen bonds: E:G.139, E:E.222, E:F.240, E:S.288, E:K.369, E:R.372
- Water bridges: E:A.140, E:K.223, E:Y.238, E:R.355, E:R.355, E:R.355, E:R.355
- Salt bridges: E:K.223, E:K.223, E:H.286, E:H.286, E:R.355, E:R.360
- pi-Stacking: E:F.240, E:F.240
- pi-Cation interactions: E:R.372
ADP.32: 20 residues within 4Å:- Chain F: Y.137, G.139, E.141, E.222, K.223, E.235, N.237, Y.238, Q.239, F.240, H.286, S.288, R.355, R.360, K.369, R.372, E.374
- Ligands: P3S.31, MG.34, MG.35
22 PLIP interactions:22 interactions with chain F- Hydrogen bonds: F:G.139, F:E.222, F:N.237, F:F.240, F:S.288, F:S.288, F:R.372
- Water bridges: F:K.223, F:K.223, F:Y.238, F:Y.238, F:R.355, F:R.355
- Salt bridges: F:K.223, F:K.223, F:H.286, F:H.286, F:R.355, F:R.360
- pi-Stacking: F:F.240, F:F.240
- pi-Cation interactions: F:R.372
ADP.38: 20 residues within 4Å:- Chain G: Y.137, G.139, E.141, E.222, K.223, E.235, N.237, Y.238, Q.239, F.240, H.286, S.288, R.355, R.360, K.369, R.372, E.374
- Ligands: P3S.37, MG.40, MG.41
22 PLIP interactions:22 interactions with chain G- Hydrogen bonds: G:G.139, G:E.222, G:F.240, G:S.288, G:S.288, G:R.372
- Water bridges: G:A.140, G:K.223, G:K.223, G:Y.238, G:R.355, G:R.355, G:R.355
- Salt bridges: G:K.223, G:K.223, G:H.286, G:H.286, G:R.355, G:R.360
- pi-Stacking: G:F.240, G:F.240
- pi-Cation interactions: G:R.372
ADP.44: 20 residues within 4Å:- Chain H: Y.137, G.139, E.141, E.222, K.223, E.235, N.237, Y.238, Q.239, F.240, H.286, S.288, R.355, R.360, K.369, R.372, E.374
- Ligands: P3S.43, MG.46, MG.47
18 PLIP interactions:18 interactions with chain H- Hydrogen bonds: H:E.222, H:F.240, H:S.288, H:K.369, H:R.372
- Water bridges: H:A.140, H:K.223, H:Y.238, H:R.355
- Salt bridges: H:K.223, H:K.223, H:H.286, H:H.286, H:R.355, H:R.360
- pi-Stacking: H:F.240, H:F.240
- pi-Cation interactions: H:R.372
ADP.50: 20 residues within 4Å:- Chain I: Y.137, G.139, E.141, E.222, K.223, E.235, N.237, Y.238, Q.239, F.240, H.286, S.288, R.355, R.360, K.369, R.372, E.374
- Ligands: P3S.49, MG.52, MG.53
15 PLIP interactions:15 interactions with chain I- Hydrogen bonds: I:E.222, I:F.240, I:S.288, I:K.369
- Water bridges: I:A.140, I:K.223, I:Y.238, I:R.355
- Salt bridges: I:K.223, I:K.223, I:H.286, I:H.286, I:R.355, I:R.360
- pi-Cation interactions: I:R.372
ADP.56: 20 residues within 4Å:- Chain J: Y.137, G.139, E.141, E.222, K.223, E.235, N.237, Y.238, Q.239, F.240, H.286, S.288, R.355, R.360, K.369, R.372, E.374
- Ligands: P3S.55, MG.58, MG.59
22 PLIP interactions:22 interactions with chain J- Hydrogen bonds: J:G.139, J:E.141, J:E.222, J:F.240, J:S.288, J:K.369, J:R.372
- Water bridges: J:A.140, J:K.223, J:Y.238, J:R.355, J:R.355, J:K.371
- Salt bridges: J:K.223, J:K.223, J:H.286, J:H.286, J:R.355, J:R.360
- pi-Stacking: J:F.240, J:F.240
- pi-Cation interactions: J:R.372
ADP.62: 20 residues within 4Å:- Chain K: G.139, E.141, E.222, K.223, E.235, N.237, Y.238, Q.239, F.240, H.286, S.288, R.355, R.360, K.369, K.371, R.372, E.374
- Ligands: P3S.61, MG.64, MG.65
22 PLIP interactions:22 interactions with chain K- Hydrogen bonds: K:G.139, K:E.222, K:F.240, K:S.288, K:K.369, K:R.372
- Water bridges: K:A.140, K:K.223, K:Y.238, K:R.355, K:R.355, K:R.355, K:R.355
- Salt bridges: K:K.223, K:K.223, K:H.286, K:H.286, K:R.355, K:R.360
- pi-Stacking: K:F.240, K:F.240
- pi-Cation interactions: K:R.372
ADP.68: 20 residues within 4Å:- Chain L: Y.137, G.139, E.141, E.222, K.223, E.235, N.237, Y.238, Q.239, F.240, H.286, S.288, R.355, R.360, K.369, R.372, E.374
- Ligands: P3S.67, MG.70, MG.71
22 PLIP interactions:22 interactions with chain L- Hydrogen bonds: L:G.139, L:E.222, L:N.237, L:F.240, L:S.288, L:S.288, L:R.372
- Water bridges: L:K.223, L:K.223, L:Y.238, L:Y.238, L:R.355, L:R.355
- Salt bridges: L:K.223, L:K.223, L:H.286, L:H.286, L:R.355, L:R.360
- pi-Stacking: L:F.240, L:F.240
- pi-Cation interactions: L:R.372
- 36 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 5 residues within 4Å:- Chain A: E.143, E.227, E.235
- Ligands: P3S.1, MG.5
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.143, A:E.227, A:E.235, H2O.2
MG.4: 7 residues within 4Å:- Chain A: E.141, H.284, E.374, R.376
- Ligands: P3S.1, ADP.2, MG.5
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:E.141, A:E.141, A:H.284, A:E.374
MG.5: 7 residues within 4Å:- Chain A: E.141, E.235, N.237
- Ligands: P3S.1, ADP.2, MG.3, MG.4
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.141, A:E.235, H2O.3
MG.9: 5 residues within 4Å:- Chain B: E.143, E.227, E.235
- Ligands: P3S.7, MG.11
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.143, B:E.227, B:E.235, H2O.9
MG.10: 9 residues within 4Å:- Chain B: E.141, H.284, H.286, R.360, E.374, R.376
- Ligands: P3S.7, ADP.8, MG.11
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:E.141, B:E.141, B:H.284, B:E.374
MG.11: 6 residues within 4Å:- Chain B: E.141, E.235
- Ligands: P3S.7, ADP.8, MG.9, MG.10
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.141, B:E.235, H2O.7
MG.15: 5 residues within 4Å:- Chain C: E.143, E.227, E.235
- Ligands: P3S.13, MG.17
4 PLIP interactions:3 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:E.143, C:E.227, C:E.235, H2O.12
MG.16: 9 residues within 4Å:- Chain C: E.141, H.284, H.286, R.360, E.374, R.376
- Ligands: P3S.13, ADP.14, MG.17
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:E.141, C:E.141, C:H.284, C:E.374
MG.17: 7 residues within 4Å:- Chain C: E.141, K.223, E.235
- Ligands: P3S.13, ADP.14, MG.15, MG.16
3 PLIP interactions:2 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:E.141, C:E.235, H2O.11
MG.21: 5 residues within 4Å:- Chain D: E.143, E.227, E.235
- Ligands: P3S.19, MG.23
4 PLIP interactions:3 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:E.143, D:E.227, D:E.235, H2O.14
MG.22: 8 residues within 4Å:- Chain D: E.141, H.284, H.286, E.374, R.376
- Ligands: P3S.19, ADP.20, MG.23
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:E.141, D:E.141, D:H.284, D:E.374
MG.23: 7 residues within 4Å:- Chain D: E.141, K.223, E.235
- Ligands: P3S.19, ADP.20, MG.21, MG.22
3 PLIP interactions:2 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:E.141, D:E.235, H2O.14
MG.27: 5 residues within 4Å:- Chain E: E.143, E.227, E.235
- Ligands: P3S.25, MG.29
4 PLIP interactions:3 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: E:E.143, E:E.227, E:E.235, H2O.18
MG.28: 9 residues within 4Å:- Chain E: E.141, H.284, H.286, R.360, E.374, R.376
- Ligands: P3S.25, ADP.26, MG.29
4 PLIP interactions:4 interactions with chain E- Metal complexes: E:E.141, E:E.141, E:H.284, E:E.374
MG.29: 6 residues within 4Å:- Chain E: E.141, E.235
- Ligands: P3S.25, ADP.26, MG.27, MG.28
3 PLIP interactions:2 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: E:E.141, E:E.235, H2O.18
MG.33: 5 residues within 4Å:- Chain F: E.143, E.227, E.235
- Ligands: P3S.31, MG.35
4 PLIP interactions:3 interactions with chain F, 1 Ligand-Water interactions- Metal complexes: F:E.143, F:E.227, F:E.235, H2O.21
MG.34: 9 residues within 4Å:- Chain F: E.141, H.284, H.286, R.360, E.374, R.376
- Ligands: P3S.31, ADP.32, MG.35
4 PLIP interactions:4 interactions with chain F- Metal complexes: F:E.141, F:E.141, F:H.284, F:E.374
MG.35: 7 residues within 4Å:- Chain F: E.141, K.223, E.235
- Ligands: P3S.31, ADP.32, MG.33, MG.34
3 PLIP interactions:2 interactions with chain F, 1 Ligand-Water interactions- Metal complexes: F:E.141, F:E.235, H2O.24
MG.39: 5 residues within 4Å:- Chain G: E.143, E.227, E.235
- Ligands: P3S.37, MG.41
4 PLIP interactions:3 interactions with chain G, 1 Ligand-Water interactions- Metal complexes: G:E.143, G:E.227, G:E.235, H2O.25
MG.40: 7 residues within 4Å:- Chain G: E.141, H.284, E.374, R.376
- Ligands: P3S.37, ADP.38, MG.41
4 PLIP interactions:4 interactions with chain G- Metal complexes: G:E.141, G:E.141, G:H.284, G:E.374
MG.41: 7 residues within 4Å:- Chain G: E.141, E.235, N.237
- Ligands: P3S.37, ADP.38, MG.39, MG.40
3 PLIP interactions:2 interactions with chain G, 1 Ligand-Water interactions- Metal complexes: G:E.141, G:E.235, H2O.27
MG.45: 5 residues within 4Å:- Chain H: E.143, E.227, E.235
- Ligands: P3S.43, MG.47
4 PLIP interactions:3 interactions with chain H, 1 Ligand-Water interactions- Metal complexes: H:E.143, H:E.227, H:E.235, H2O.32
MG.46: 9 residues within 4Å:- Chain H: E.141, H.284, H.286, R.360, E.374, R.376
- Ligands: P3S.43, ADP.44, MG.47
4 PLIP interactions:4 interactions with chain H- Metal complexes: H:E.141, H:E.141, H:H.284, H:E.374
MG.47: 6 residues within 4Å:- Chain H: E.141, E.235
- Ligands: P3S.43, ADP.44, MG.45, MG.46
3 PLIP interactions:2 interactions with chain H, 1 Ligand-Water interactions- Metal complexes: H:E.141, H:E.235, H2O.31
MG.51: 5 residues within 4Å:- Chain I: E.143, E.227, E.235
- Ligands: P3S.49, MG.53
4 PLIP interactions:3 interactions with chain I, 1 Ligand-Water interactions- Metal complexes: I:E.143, I:E.227, I:E.235, H2O.36
MG.52: 9 residues within 4Å:- Chain I: E.141, H.284, H.286, R.360, E.374, R.376
- Ligands: P3S.49, ADP.50, MG.53
4 PLIP interactions:4 interactions with chain I- Metal complexes: I:E.141, I:E.141, I:H.284, I:E.374
MG.53: 7 residues within 4Å:- Chain I: E.141, K.223, E.235
- Ligands: P3S.49, ADP.50, MG.51, MG.52
3 PLIP interactions:2 interactions with chain I, 1 Ligand-Water interactions- Metal complexes: I:E.141, I:E.235, H2O.35
MG.57: 5 residues within 4Å:- Chain J: E.143, E.227, E.235
- Ligands: P3S.55, MG.59
4 PLIP interactions:3 interactions with chain J, 1 Ligand-Water interactions- Metal complexes: J:E.143, J:E.227, J:E.235, H2O.38
MG.58: 8 residues within 4Å:- Chain J: E.141, H.284, H.286, E.374, R.376
- Ligands: P3S.55, ADP.56, MG.59
4 PLIP interactions:4 interactions with chain J- Metal complexes: J:E.141, J:E.141, J:H.284, J:E.374
MG.59: 7 residues within 4Å:- Chain J: E.141, K.223, E.235
- Ligands: P3S.55, ADP.56, MG.57, MG.58
3 PLIP interactions:2 interactions with chain J, 1 Ligand-Water interactions- Metal complexes: J:E.141, J:E.235, H2O.38
MG.63: 5 residues within 4Å:- Chain K: E.143, E.227, E.235
- Ligands: P3S.61, MG.65
4 PLIP interactions:3 interactions with chain K, 1 Ligand-Water interactions- Metal complexes: K:E.143, K:E.227, K:E.235, H2O.42
MG.64: 9 residues within 4Å:- Chain K: E.141, H.284, H.286, R.360, E.374, R.376
- Ligands: P3S.61, ADP.62, MG.65
4 PLIP interactions:4 interactions with chain K- Metal complexes: K:E.141, K:E.141, K:H.284, K:E.374
MG.65: 6 residues within 4Å:- Chain K: E.141, E.235
- Ligands: P3S.61, ADP.62, MG.63, MG.64
3 PLIP interactions:2 interactions with chain K, 1 Ligand-Water interactions- Metal complexes: K:E.141, K:E.235, H2O.42
MG.69: 5 residues within 4Å:- Chain L: E.143, E.227, E.235
- Ligands: P3S.67, MG.71
4 PLIP interactions:3 interactions with chain L, 1 Ligand-Water interactions- Metal complexes: L:E.143, L:E.227, L:E.235, H2O.45
MG.70: 9 residues within 4Å:- Chain L: E.141, H.284, H.286, R.360, E.374, R.376
- Ligands: P3S.67, ADP.68, MG.71
4 PLIP interactions:4 interactions with chain L- Metal complexes: L:E.141, L:E.141, L:H.284, L:E.374
MG.71: 7 residues within 4Å:- Chain L: E.141, K.223, E.235
- Ligands: P3S.67, ADP.68, MG.69, MG.70
3 PLIP interactions:2 interactions with chain L, 1 Ligand-Water interactions- Metal complexes: L:E.141, L:E.235, H2O.48
- 12 x CL: CHLORIDE ION(Non-functional Binders)
CL.6: 3 residues within 4Å:- Chain F: Q.430, L.431, S.432
Ligand excluded by PLIPCL.12: 4 residues within 4Å:- Chain E: Q.430, L.431, S.432, I.468
Ligand excluded by PLIPCL.18: 4 residues within 4Å:- Chain A: Q.430, L.431, S.432, I.468
Ligand excluded by PLIPCL.24: 3 residues within 4Å:- Chain B: Q.430, L.431, S.432
Ligand excluded by PLIPCL.30: 4 residues within 4Å:- Chain C: Q.430, L.431, S.432, I.468
Ligand excluded by PLIPCL.36: 3 residues within 4Å:- Chain D: Q.430, L.431, S.432
Ligand excluded by PLIPCL.42: 3 residues within 4Å:- Chain L: Q.430, L.431, S.432
Ligand excluded by PLIPCL.48: 4 residues within 4Å:- Chain K: Q.430, L.431, S.432, I.468
Ligand excluded by PLIPCL.54: 4 residues within 4Å:- Chain G: Q.430, L.431, S.432, I.468
Ligand excluded by PLIPCL.60: 3 residues within 4Å:- Chain H: Q.430, L.431, S.432
Ligand excluded by PLIPCL.66: 4 residues within 4Å:- Chain I: Q.430, L.431, S.432, I.468
Ligand excluded by PLIPCL.72: 3 residues within 4Å:- Chain J: Q.430, L.431, S.432
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Krajewski, W.W. et al., Structure of Mycobacterium Tuberculosis Glutamine Synthetase in Complex with a Transition-State Mimic Provides Functional Insights. Proc.Natl.Acad.Sci.USA (2005)
- Release Date
- 2005-07-07
- Peptides
- GLUTAMINE SYNTHETASE 1: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
AH
BI
CJ
DK
EL
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x P3S: L-METHIONINE-S-SULFOXIMINE PHOSPHATE(Non-covalent)
- 12 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 36 x MG: MAGNESIUM ION(Non-covalent)
- 12 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Krajewski, W.W. et al., Structure of Mycobacterium Tuberculosis Glutamine Synthetase in Complex with a Transition-State Mimic Provides Functional Insights. Proc.Natl.Acad.Sci.USA (2005)
- Release Date
- 2005-07-07
- Peptides
- GLUTAMINE SYNTHETASE 1: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
AH
BI
CJ
DK
EL
F